Pre_GI: BLASTP Hits

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Query: NC_009439:574437:574437 Pseudomonas mendocina ymp, complete genome

Start: 574437, End: 574649, Length: 213

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015740:636667:639084639084639296213Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete50S ribosomal protein L317e-34142
NC_007912:3403101:341898734189873419199213Saccharophagus degradans 2-40, complete genome50S ribosomal protein L312e-25114
NC_007645:6096345:611355961135596113918360Hahella chejuensis KCTC 2396, complete genomeribosomal protein L316e-25112
NC_012913:2189862:219827421982742198486213Aggregatibacter aphrophilus NJ8700, complete genomeribosomal protein L316e-25112
NC_016513:689689:698008698008698220213Aggregatibacter actinomycetemcomitans ANH9381 chromosome, complete50S ribosomal protein L312e-24110
NC_013416:386301:394618394618394830213Aggregatibacter actinomycetemcomitans D11S-1, complete genome50S ribosomal protein L312e-24110
NC_013353:4707712:472218647221864722398213Escherichia coli O103:H2 str. 12009, complete genome50S ribosomal protein L311e-22105
AP010958:4707712:472218647221864722398213Escherichia coli O103:H2 str. 12009 DNA, complete genome50S ribosomal subunit protein L311e-22105
NC_014315:352395:356507356507356713207Nitrosococcus watsoni C-113 chromosome, complete genome50S ribosomal protein L311e-21101
NC_007484:266594:268174268174268380207Nitrosococcus oceani ATCC 19707, complete genomeRibosomal protein L311e-21101
NC_015222:1203465:120831212083121208512201Nitrosomonas sp. AL212 chromosome, complete genome50S ribosomal protein L315e-2199.8
NC_014210:397922:402200402200402409210Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,ribosomal protein L315e-2096.3
NC_014909:662500:683474683474683716243Candidatus Blochmannia vafer str. BVAF chromosome, complete genome50S ribosomal protein L317e-2095.9
NC_009465:938378:971537971537971749213Candidatus Vesicomyosocius okutanii HA, complete genome50S ribosomal protein L317e-2095.9
NC_021177:5697210:570089757008975701121225Streptomyces fulvissimus DSM 40593, complete genome50S ribosomal protein L312e-1994.7
NC_006369:734080:765828765828766055228Legionella pneumophila str. Lens, complete genome50S ribosomal protein L312e-1994
NC_002942:675829:697705697705697932228Legionella pneumophila subsp. pneumophila str. Philadelphia 1,50S ribosomal protein L312e-1994
NC_009494:775676:803164803164803391228Legionella pneumophila str. Corby chromosome, complete genome50S ribosomal protein L312e-1994
NC_014125:766576:789203789203789430228Legionella pneumophila 2300/99 Alcoy chromosome, complete genome50S ribosomal protein L312e-1994
NC_015572:293665:304937304937305137201Methylomonas methanica MC09 chromosome, complete genome50S ribosomal protein L312e-1890.9
NC_014363:114239:119075119075119512438Olsenella uli DSM 7084 chromosome, complete genomeLSU ribosomal protein L31P2e-1788.2
NC_017243:599814:620814620814621032219Brachyspira intermedia PWS/A chromosome, complete genome50S ribosomal protein L313e-1787.4
NC_015389:809474:824463824463824966504Coriobacterium glomerans PW2 chromosome, complete genomeLSU ribosomal protein L31P8e-1785.5
NC_005061:647567:667500667500667721222Candidatus Blochmannia floridanus, complete genome50S ribosomal protein L312e-1684.7
NC_020126:7255111:727790872779087278180273Myxococcus stipitatus DSM 14675, complete genome50S ribosomal protein L318e-1682.4
NC_019903:3537545:355244235524423552639198Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,50S ribosomal protein L311e-1581.6
NC_020409:168916:172847172847173068222Desulfovibrio piezophilus str. nov C1TLV30 chromosome, complete50S ribosomal protein L315e-1579.7
NC_010376:1175916:117874611787461178949204Finegoldia magna ATCC 29328, complete genome50S ribosomal protein L311e-1478.6
NC_015672:2071141:208691420869142087144231Flexistipes sinusarabici DSM 4947 chromosome, complete genome50S ribosomal protein L312e-1477.8
NC_013943:2431643:243289824328982433107210Denitrovibrio acetiphilus DSM 12809 chromosome, complete genome50S ribosomal protein L319e-1475.5
NC_015958:141500:155618155618155893276Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genome50S ribosomal protein L311e-1375.1
NC_013939:106681:109173109173109391219Deferribacter desulfuricans SSM1, complete genome50S ribosomal protein L316e-1372.8
NC_014643:2056280:212854621285462128803258Rothia dentocariosa ATCC 17931 chromosome, complete genome50S ribosomal protein L312e-1271.2
NC_019970:2551607:256794025679402568149210Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeribosomal protein L312e-1270.9
NC_015555:2259500:229630722963072296516210Thermoanaerobacterium xylanolyticum LX-11 chromosome, complete50S ribosomal protein L312e-1270.9
NC_009617:489971:489971489971490180210Clostridium beijerinckii NCIMB 8052 chromosome, complete genome50S ribosomal protein L313e-1270.5
NC_015682:205900:250819250819251043225Thermodesulfobacterium sp. OPB45 chromosome, complete genome50S ribosomal protein L317e-1269.3
NC_013771:1171251:119200611920061192260255Cyanobacterium UCYN-A, complete genomeLSU ribosomal protein L31P8e-1268.9
NC_021182:380500:382720382720382932213Clostridium pasteurianum BC1, complete genomeribosomal protein L311e-1168.9
NC_013161:212941:216455216455216703249Cyanothece sp. PCC 8802, complete genomeribosomal protein L315e-1166.6
NC_011726:213956:217470217470217718249Cyanothece sp. PCC 8801, complete genomeribosomal protein L315e-1166.6
NC_010546:4144449:416579241657924166106315Cyanothece sp. ATCC 51142 chromosome circular, complete sequence50S ribosomal protein L315e-1166.2
NC_008820:2027977:204946520494652049746282Prochlorococcus marinus str. MIT 9303, complete genome50S ribosomal protein L318e-1165.9
NC_005070:1978000:197889619788961979156261Synechococcus sp. WH 8102, complete genome50S ribosomal protein L312e-1064.3
NC_017063:775337:778716778716778919204Helicobacter pylori ELS37 chromosome, complete genome50S ribosomal protein L313e-1063.9
NC_014256:683384:723770723770723973204Helicobacter pylori B8 chromosome, complete genome50S ribosomal protein L313e-1063.9
NC_003911:3453764:345632434563243456545222Silicibacter pomeroyi DSS-3, complete genome50S ribosomal protein L313e-1063.9
NC_007516:347824:362510362510362761252Synechococcus sp. CC9605, complete genome50S ribosomal protein L313e-1063.9
NC_007577:1517000:152379715237971524117321Prochlorococcus marinus str. MIT 9312, complete genomeribosomal protein L315e-1063.2
NC_007778:5079500:507961850796185079845228Rhodopseudomonas palustris HaA2, complete genomeRibosomal protein L317e-1062.8
NC_009091:1423677:145716714571671457427261Prochlorococcus marinus str. MIT 9301, complete genome50S ribosomal protein L317e-1062.8
NC_005072:1458799:147261114726111472871261Prochlorococcus marinus subsp. pastoris str. CCMP1986, complete50S ribosomal protein L317e-1062.8
NC_009840:1485383:155402815540281554288261Prochlorococcus marinus str. MIT 9215, complete genome50S ribosomal protein L317e-1062.8
NC_008816:1476209:148351214835121483772261Prochlorococcus marinus str. AS9601, complete genome50S ribosomal protein L316e-1062.8
NC_008817:1476473:151414615141461514406261Prochlorococcus marinus str. MIT 9515, complete genome50S ribosomal protein L316e-1062.8
NC_013722:2810721:281574428157442815986243Xanthomonas albilineans, complete genomeputative ribosomal protein l311e-0962
NC_013037:3994083:400973240097324009974243Dyadobacter fermentans DSM 18053, complete genomeribosomal protein L311e-0962
NC_019949:525249:556851556851557060210Mycoplasma cynos C142 complete genome50S ribosomal protein L314e-0960.1
NC_018704:2149229:216081021608102161055246Amphibacillus xylanus NBRC 15112, complete genome50S ribosomal protein L31 type B6e-0959.7
NC_019771:4459000:448060444806044480840237Anabaena cylindrica PCC 7122, complete genomeLSU ribosomal protein L31P6e-0959.7
NC_015566:1127595:115610811561081156362255Serratia sp. AS12 chromosome, complete genome50S ribosomal protein L31 type B5e-0959.7
NC_015567:1127780:115629311562931156547255Serratia sp. AS9 chromosome, complete genome50S ribosomal protein L31 type B5e-0959.7
NC_014501:5471984:547991854799185480169252Cyanothece sp. PCC 7822 chromosome, complete genome50S ribosomal protein L315e-0959.7
NC_015144:367278:384830384830385087258Weeksella virosa DSM 16922 chromosome, complete genome50S ribosomal protein L31 type B2e-0858.2
NC_014722:1191380:120945512094551209799345Burkholderia rhizoxinica HKI 454, complete genomeLSU ribosomal protein L31P2e-0858.2
NC_009800:349592:359970359970360233264Escherichia coli HS, complete genomeribosomal protein L314e-0857
NC_013941:378555:385894385894386160267Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeribosomal protein L315e-0856.2
NC_010473:279948:287288287288287551264Escherichia coli str. K-12 substr. DH10B, complete genomerpmE (L31) paralog6e-0856.2
NC_010498:301000:328886328886329149264Escherichia coli SMS-3-5, complete genome50S ribosomal protein L31 type B6e-0856.2
NC_000913:303719:311738311738312001264Escherichia coli K12, complete genome50S ribosomal protein L316e-0856.2
NC_011751:348000:356178356178356441264Escherichia coli UMN026 chromosome, complete genome50S ribosomal protein L31 type B6e-0856.2
NC_011601:273430:282950282950283213264Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome50S ribosomal protein L316e-0856.2
NC_011742:291237:312471312471312734264Escherichia coli S88 chromosome, complete genome50S ribosomal protein L316e-0856.2
NC_011745:333061:345343345343345606264Escherichia coli ED1a chromosome, complete genome50S ribosomal protein L31 type B6e-0856.2
NC_007946:289425:323106323106323372267Escherichia coli UTI89, complete genome50S ribosomal protein L31 type B-15e-0856.2
NC_004431:364000:387632387632387898267Escherichia coli CFT073, complete genome50S ribosomal protein L315e-0856.2
NC_008563:318993:324696324696324962267Escherichia coli APEC O1, complete genome50S ribosomal protein L31 type B-15e-0856.2
NC_008253:334467:379805379805380071267Escherichia coli 536, complete genome50S ribosomal protein L31 type B5e-0856.2
NC_012947:3487392:349942134994213499687267Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete50S ribosomal protein L31 type B5e-0856.2
NC_015703:1898159:190050619005061900748243Runella slithyformis DSM 19594 chromosome, complete genome50S ribosomal protein L31 type B1e-0755.5
NC_012925:1357783:137512013751201375362243Streptococcus suis P1/7, complete genome50S ribosomal protein L31 type B1e-0755.1
NC_009442:1446508:146384714638471464089243Streptococcus suis 05ZYH33 chromosome, complete genome50S ribosomal protein L311e-0755.1
NC_009443:1445936:146326714632671463509243Streptococcus suis 98HAH33, complete genome50S ribosomal protein L31 type B1e-0755.1
NC_012924:1446190:146352814635281463770243Streptococcus suis SC84, complete genome50S ribosomal protein L31 type B1e-0755.1
NC_012926:1496510:151386815138681514110243Streptococcus suis BM407 chromosome, complete genome50S ribosomal protein L311e-0755.1
AP010958:3853082:386083038608303861093264Escherichia coli O103:H2 str. 12009 DNA, complete genomeribosomal proteinL31-like protein2e-0754.7
NC_011745:3443371:346937534693753469638264Escherichia coli ED1a chromosome, complete genome50S ribosomal protein L31 type B2e-0754.7
NC_013008:1307392:134046613404661340729264Escherichia coli O157:H7 str. TW14359 chromosome, complete genome50S ribosomal protein L312e-0754.7
NC_013353:3853082:386083038608303861093264Escherichia coli O103:H2 str. 12009, complete genomeribosomal proteinL31-like protein2e-0754.7
NC_008022:556457:577923577923578183261Streptococcus pyogenes MGAS10270, complete genomeLSU ribosomal protein L31P3e-0753.9
NC_003923:2178000:219698121969812197235255Staphylococcus aureus subsp. aureus MW2, complete genomeribosomal protein L314e-0753.1
NC_002951:2153571:217187821718782172132255Staphylococcus aureus subsp. aureus COL, complete genomeribosomal protein L314e-0753.1
NC_002953:2157781:217608621760862176340255Staphylococcus aureus subsp. aureus MSSA476, complete genomeputative 50S ribosomal protein L314e-0753.1
NC_002758:2227874:224677022467702247024255Staphylococcus aureus subsp. aureus Mu50, complete genomeribosomal protein L314e-0753.1
NC_009782:2230000:224840822484082248662255Staphylococcus aureus subsp. aureus Mu3, complete genomeribosomal protein L314e-0753.1
NC_007793:2217872:223568022356802235934255Staphylococcus aureus subsp. aureus USA300, complete genome50S ribosomal protein L31 type B4e-0753.1
NC_007622:2117188:213448421344842134738255Staphylococcus aureus RF122, complete genome50S ribosomal protein L31 type B4e-0753.1
NC_002952:2256000:227469722746972274951255Staphylococcus aureus subsp. aureus MRSA252, complete genomeputative 50S ribosomal protein L314e-0753.1
NC_002745:2152000:217033821703382170592255Staphylococcus aureus subsp. aureus N315, complete genomeribosomal protein L314e-0753.1
NC_010079:2217767:223607422360742236328255Staphylococcus aureus subsp. aureus USA300_TCH1516, completeribosomal protein L314e-0753.1
NC_017351:2199644:221857122185712218825255Staphylococcus aureus subsp. aureus 11819-97 chromosome, complete50S ribosomal protein L314e-0753.1
NC_017341:2247696:226600322660032266257255Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,putative 50S ribosomal protein L314e-0753.1
NC_016928:2121919:214009821400982140352255Staphylococcus aureus subsp. aureus M013 chromosome, complete50S ribosomal protein L314e-0753.1
NC_016912:2035589:205389620538962054150255Staphylococcus aureus subsp. aureus VC40 chromosome, complete50S ribosomal protein L314e-0753.1
NC_009641:2221891:224026122402612240515255Staphylococcus aureus subsp. aureus str. Newman chromosome,50S ribosomal protein L31 type B4e-0753.1
NC_009632:2257764:227666022766602276914255Staphylococcus aureus subsp. aureus JH1 chromosome, complete50S ribosomal protein L314e-0753.1
NC_009487:2257889:227678522767852277039255Staphylococcus aureus subsp. aureus JH9 chromosome, complete50S ribosomal protein L314e-0753.1
NC_007795:2163706:218260221826022182856255Staphylococcus aureus subsp. aureus NCTC 8325, complete genomeribosomal protein L314e-0753.1
NC_013928:797714:799218799218799484267Streptococcus mutans NN2025, complete genome50S ribosomal protein L316e-0752.8
NC_014218:1163513:116527011652701165515246Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeribosomal protein L319e-0752.4
NC_010184:5085977:509236450923645092618255Bacillus weihenstephanensis KBAB4, complete genomeribosomal protein L311e-0652
NC_003909:4996783:503795350379535038198246Bacillus cereus ATCC 10987, complete genome50S ribosomal protein L311e-0651.6
NC_011658:5087887:509237950923795092624246Bacillus cereus AH187 chromosome, complete genome50S ribosomal protein L311e-0651.6
NC_016771:5038435:504470250447025044947246Bacillus cereus NC7401, complete genome50S ribosomal protein L311e-0651.6
NC_017200:5149528:517717951771795177424246Bacillus thuringiensis serovar finitimus YBT-020 chromosome,50S ribosomal protein L311e-0651.6
NC_012472:5094009:509940850994085099653246Bacillus cereus 03BB102, complete genome50S ribosomal protein L311e-0651.6
NC_014335:5005267:501202450120245012269246Bacillus cereus biovar anthracis str. CI chromosome, complete50S ribosomal protein L311e-0651.6
NC_006274:5122500:512862851286285128873246Bacillus cereus E33L, complete genome50S ribosomal protein L311e-0651.6
NC_007530:5033095:505859350585935058838246Bacillus anthracis str. 'Ames Ancestor', complete genome50S ribosomal protein L311e-0651.6
NC_003997:5032969:505846750584675058712246Bacillus anthracis str. Ames, complete genome50S ribosomal protein L311e-0651.6
NC_005945:5053000:505980250598025060047246Bacillus anthracis str. Sterne, complete genome50S ribosomal protein L311e-0651.6
NC_004722:5194000:523718052371805237434255Bacillus cereus ATCC 14579, complete genome50S ribosomal protein L311e-0651.6
NC_016779:5009320:505268150526815052926246Bacillus cereus F837/76 chromosome, complete genome50S ribosomal protein L311e-0651.6
NC_012659:5031827:505849350584935058738246Bacillus anthracis str. A0248, complete genome50S ribosomal protein L31 type B1e-0651.6
NC_012581:5052000:506112550611255061370246Bacillus anthracis str. CDC 684 chromosome, complete genome50S ribosomal protein L311e-0651.6
NC_011773:5091609:511827851182785118523246Bacillus cereus AH820 chromosome, complete genome50S ribosomal protein L311e-0651.6
NC_011725:5201995:524516052451605245405246Bacillus cereus B4264 chromosome, complete genome50S ribosomal protein L311e-0651.6
NC_005957:5037499:506414350641435064388246Bacillus thuringiensis serovar konkukian str. 97-27, complete50S ribosomal protein L311e-0651.6
NC_009674:3903893:390942339094233909668246Bacillus cytotoxicus NVH 391-98 chromosome, complete genome50S ribosomal protein L314e-0650.4
NC_017208:5305969:531198653119865312231246Bacillus thuringiensis serovar chinensis CT-43 chromosome, complete50S ribosomal protein L314e-0650.1
NC_011772:5158680:519887951988795199124246Bacillus cereus G9842, complete genomeribosomal protein L314e-0650.1