Pre_GI: BLASTP Hits

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Query: NC_009439:4913767:4930091 Pseudomonas mendocina ymp, complete genome

Start: 4930091, End: 4931143, Length: 1053

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012560:68251:849138491385806894Azotobacter vinelandii DJ, complete genomeABC transporter, periplasmic binding protein2e-51203
NC_021150:68251:849138491385806894Azotobacter vinelandii CA6, complete genomeABC transporter, periplasmic binding protein2e-51203
NC_007384:1355060:135777913577791358765987Shigella sonnei Ss046, complete genomeputative adhesin3e-23109
NC_016822:1339058:134067413406741341606933Shigella sonnei 53G, complete genomehigh-affinity zinc transporter periplasmic protein4e-23109
NC_013361:2591829:261885726188572619789933Escherichia coli O26:H11 str. 11368 chromosome, complete genomehigh-affinity zinc transporter periplasmic protein4e-23109
NC_011741:1978500:200556020055602006492933Escherichia coli IAI1 chromosome, complete genomehigh-affinity zinc transporter periplasmic component4e-23109
CU928160:1978500:200556020055602006492933Escherichia coli IAI1 chromosome, complete genomezinc transporter subunit: periplasmic-binding component of ABC superfamily4e-23109
NC_013364:2355298:238232723823272383259933Escherichia coli O111:H- str. 11128, complete genomezinc transporter subunit ZnuA5e-23108
NC_010104:1096081:1112777111277711137811005Brucella canis ATCC 23365 chromosome II, complete sequencezinc uptake ABC transporter, substrate-binding protein7e-22104
NC_006933:1051873:1068458106845810694621005Brucella abortus biovar 1 str. 9-941 chromosome II, completeZnuA, zinc ABC transporter, periplasmic zinc-bnding protein8e-22104
NC_007624:1046500:1063214106321410642181005Brucella melitensis biovar Abortus 2308 chromosome II, completePeriplasmic solute binding protein8e-22104
NC_010740:1051000:1067715106771510687191005Brucella abortus S19 chromosome 2, complete sequencePeriplasmic solute binding protein8e-22104
NC_013118:1109610:1126285112628511272891005Brucella microti CCM 4915 chromosome 2, complete genomezinc ABC transporter, periplasmic zinc-binding protein9e-22104
NC_004311:1096649:1113346111334611143501005Brucella suis 1330 chromosome II, complete sequencezinc ABC transporter, periplasmic zinc-binding protein9e-22104
NC_015858:1150446:1166899116689911679031005Brucella pinnipedialis B2/94 chromosome chromosome 2, completezinc ABC transporter periplasmic zinc-binding protein9e-22104
NC_003318:183914:185055185055186041987Brucella melitensis 16M chromosome II, complete sequenceHIGH-AFFINITY ZINC UPTAKE SYSTEM PROTEIN ZNUA9e-22104
NC_009668:1591290:1608214160821416092541041Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceperiplasmic solute binding protein2e-21103
NC_010167:1287000:1306975130697513079791005Brucella suis ATCC 23445 chromosome II, complete sequencehypothetical protein5e-21102
NC_018644:137755:1660011660011670321032Alpha proteobacterium HIMB59 chromosome, complete genomeperiplasmic solute-binding family protein1e-20100
NC_016513:54802:7641276412774311020Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completehigh-affinity zinc uptake system protein ZnuA7e-1995.1
NC_009465:224564:246124246124247002879Candidatus Vesicomyosocius okutanii HA, complete genomezinc ABC transporter substrate-binding protein2e-1066.6
NC_018868:2615822:261763226176322618540909Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehigh-affinity zinc uptake system protein ZnuA1e-0861.2
NC_012997:59407:594075940760300894Teredinibacter turnerae T7901, complete genometranscriptional regulator, XRE family2e-0756.6
NC_017065:13188:158871588716840954Rickettsia slovaca str. D-CWPP chromosome, complete genomezinc/manganese ABC transporter substrate binding protein4e-0756.2
NC_016639:13188:158901589016843954Rickettsia slovaca 13-B chromosome, complete genomeZinc/manganese ABC transporter substrate binding protein4e-0756.2
NC_017044:15697:156971569716506810Rickettsia parkeri str. Portsmouth chromosome, complete genomezinc/manganese ABC transporter substrate binding protein7e-0755.1
NC_017042:77363:959409594096746807Rickettsia rhipicephali str. 3-7-female6-CWPP chromosome, completezinc/manganese ABC transporter substrate binding protein7e-0755.5
NC_017028:109811:126855126855127808954Candidatus Rickettsia amblyommii str. GAT-30V chromosome, completezinc/manganese ABC transporter substrate binding protein8e-0755.1
NC_010263:13826:155131551316466954Rickettsia rickettsii str. Iowa, complete genomeperiplasmic solute binding protein family1e-0654.7
NC_012633:12000:126501265013603954Rickettsia africae ESF-5, complete genomeZinc/manganese ABC transporter substrate binding protein1e-0654.3
NC_017043:735150:735150735150736103954Rickettsia montanensis str. OSU 85-930 chromosome, complete genomezinc/manganese ABC transporter substrate binding protein1e-0654.3
NC_016050:15224:156431564316596954Rickettsia japonica YH, complete genomezinc/manganese ABC transporter substrate binding protein1e-0653.9
NC_009792:923155:947343947343948248906Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-0653.1
NC_020181:527592:561410561410562360951Enterobacter aerogenes EA1509E, complete genomeZinc ABC transporter, periplasmic-binding protein ZnuA3e-0653.1