Pre_GI: BLASTP Hits

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Query: NC_009439:4734237:4754199 Pseudomonas mendocina ymp, complete genome

Start: 4754199, End: 4755443, Length: 1245

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013592:1056500:1073143107314310743631221Dickeya dadantii Ech586, complete genomemajor facilitator superfamily MFS_16e-60231
NC_011894:3885490:3887586388758638888241239Methylobacterium nodulans ORS 2060, complete genomemajor facilitator superfamily MFS_14e-57222
NC_012880:3421500:3426826342682634280941269Dickeya dadantii Ech703, complete genomemajor facilitator superfamily MFS_11e-56221
NC_012483:3529895:3546790354679035481091320Acidobacterium capsulatum ATCC 51196, complete genometransporter, major facilitator family4e-54212
NC_007908:1010162:1021985102198510232111227Rhodoferax ferrireducens T118, complete genomemajor facilitator superfamily MFS_13e-50199
NC_003296:1461538:1482844148284414841181275Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE TRANSMEMBRANE PROTEIN1e-49197
NC_015510:1096755:1111213111121311125681356Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomemajor facilitator superfamily protein1e-34147
NC_017025:283182:2875292875292887851257Flavobacterium indicum GPTSA100-9, complete genomeMajor facilitator superfamily (MFS) permease3e-29129
NC_013524:392089:3945533945533958481296Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomemajor facilitator superfamily MFS_11e-21104
NC_010162:6562571:6578627657862765800091383Sorangium cellulosum 'So ce 56', complete genomemajor facilitator superfamily permease2e-1170.9
NC_011894:4360577:4368380436838043695941215Methylobacterium nodulans ORS 2060, complete genomemajor facilitator superfamily MFS_14e-1169.3
NC_015172:1002872:1005451100545110066681218Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomemajor facilitator superfamily MFS_19e-1065.1
NC_021177:2241647:2244553224455322458151263Streptomyces fulvissimus DSM 40593, complete genomeMajor facilitator superfamily MFS_11e-0964.7
NC_006177:2943259:2948439294843929496741236Symbiobacterium thermophilum IAM 14863, complete genomeputative transporter6e-0962.4
NC_014151:813755:8364008364008377701371Cellulomonas flavigena DSM 20109 chromosome, complete genomemajor facilitator superfamily MFS_11e-0861.2
NC_011059:65414:8983789837911651329Prosthecochloris aestuarii DSM 271, complete genomemajor facilitator superfamily MFS_11e-0861.2
NC_009664:4423829:4633438463343846347181281Kineococcus radiotolerans SRS30216, complete genomemajor facilitator superfamily MFS_15e-0859.3
NC_010617:92000:1124411124411137211281Kocuria rhizophila DC2201, complete genomeputative MFS transporter4e-0859.3
NC_014931:1044313:1069023106902310706031581Variovorax paradoxus EPS chromosome, complete genomeprotein of unknown function DUF894 DitE4e-0653.1
NC_010545:1729161:1731853173185317331871335Corynebacterium urealyticum DSM 7109, complete genomehypothetical protein5e-0652.8
NC_012997:4491871:4505769450576945070221254Teredinibacter turnerae T7901, complete genomeputative enterobactin exporter EntS6e-0652.4