Pre_GI: BLASTP Hits

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Query: NC_009439:4734237:4746641 Pseudomonas mendocina ymp, complete genome

Start: 4746641, End: 4747633, Length: 993

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016023:1839503:183950318395031840489987Bacillus coagulans 36D1 chromosome, complete genomealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein3e-35149
NC_016830:6499234:650119765011976502162966Pseudomonas fluorescens F113 chromosome, complete genomeSsuA protein3e-28125
NC_016816:1970189:197217019721701973117948Pantoea ananatis LMG 5342, complete genomealiphatic sulfonate ABC transporter substrate-binding protein2e-27123
NC_009439:4734237:473761347376134738593981Pseudomonas mendocina ymp, complete genomealiphatic sulfonate ABC transporter periplasmic ligand-binding protein2e-27123
NC_009439:4734237:474938547493854750377993Pseudomonas mendocina ymp, complete genomealiphatic sulfonate ABC transporter periplasmic ligand-binding protein3e-26119
NC_004578:2671508:267355826735582674532975Pseudomonas syringae pv. tomato str. DC3000, complete genomeABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family1e-24114
NC_009659:1129066:114738211473821148344963Janthinobacterium sp. Marseille chromosome, complete genomesulfonate ABC transporter periplasmic sulfonate-binding protein SsuA7e-23108
NC_007952:444616:4446164446164456201005Burkholderia xenovorans LB400 chromosome 2, complete sequenceABC sulfonate transporter, periplasmic ligand binding protein3e-22105
NC_008392:542000:543030543030544001972Burkholderia cepacia AMMD chromosome 3, complete sequencealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein3e-21102
NC_021066:2197490:219653121965312197493963Raoultella ornithinolytica B6, complete genomealiphatic sulfonate ABC transporter substrate-binding protein3e-21102
NC_008544:348500:364819364819365790972Burkholderia cenocepacia HI2424 chromosome 3, complete sequencealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein6e-21101
NC_007509:1383013:487648765847972Burkholderia sp. 383 chromosome 3, complete sequenceABC transporter, substrate-binding protein, aliphatic sulphonates1e-20100
NC_007509:3668:487648765847972Burkholderia sp. 383 chromosome 3, complete sequenceABC transporter, substrate-binding protein, aliphatic sulphonates1e-20100
NC_008062:370902:386999386999387970972Burkholderia cenocepacia AU 1054 chromosome 3, complete sequenceABC transporter, substrate-binding protein, aliphatic sulphonates1e-20100
NC_010512:734834:750846750846751817972Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein2e-20100
NC_014121:2745097:274413827441382745100963Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completealkanesulfonate transporter substrate-binding subunit2e-1997.1
NC_013406:1217385:126499712649971265896900Paenibacillus sp. Y412MC10 chromosome, complete genomealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein2e-1893.6
NC_013510:517878:534199534199535191993Thermomonospora curvata DSM 43183, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein1e-1790.9
NC_016816:1970189:1970189197018919720751887Pantoea ananatis LMG 5342, complete genomeFis family sigma-54 specific transcriptional regulator3e-1789.7
NC_016604:2944555:294455529445552945532978Mycobacterium rhodesiae NBB3 chromosome, complete genomeABC transporter, substrate-binding protein, aliphatic sulfonates family6e-1788.6
NC_015136:1301576:1324358132435813254251068Burkholderia sp. CCGE1001 chromosome 1, complete sequencenitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein7e-1788.2
NC_013421:4714478:4752432475243247534391008Pectobacterium wasabiae WPP163, complete genomeNMT1/THI5 like domain protein1e-1687.4
NC_007907:2830574:2837069283706928380701002Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-1686.3
NC_020064:3998715:402387240238724024816945Serratia marcescens FGI94, complete genomeABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component8e-1684.7
NC_010505:1205747:120989612098961210894999Methylobacterium radiotolerans JCM 2831, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein5e-1582.4
NC_010581:561579:581203581203582177975Beijerinckia indica subsp. indica ATCC 9039, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein4e-1479
NC_021066:3028421:3027357302735730284241068Raoultella ornithinolytica B6, complete genomeNMT1/THI5 like domain-containing protein7e-1478.2
NC_013406:1217385:126284012628401263826987Paenibacillus sp. Y412MC10 chromosome, complete genomealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein1e-1377.8
NC_020064:3998715:403051240305124031486975Serratia marcescens FGI94, complete genomeABC transporter, substrate-binding protein, aliphatic sulfonates family1e-1377.4
NC_014640:4193193:4209706420970642108151110Achromobacter xylosoxidans A8 chromosome, complete genomeABC sulfate ester transporter periplasmic ligand binding protein1e-1377.4
NC_012791:4079062:409435240943524095317966Variovorax paradoxus S110 chromosome 1, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein1e-1377.4
NC_010725:5217260:523224952322495233190942Methylobacterium populi BJ001, complete genomealiphatic sulfonates family ABC transporter, periplsmic ligand-binding protein4e-1375.9
NC_013716:1298932:1300723130072313017901068Citrobacter rodentium ICC168, complete genomeABC transporter, periplasmic binding component9e-1374.7
NC_020291:4246500:4268423426842342694631041Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometaurine-binding periplasmic protein TauA2e-1273.2
NC_009485:3461051:346335634633563464297942Bradyrhizobium sp. BTAi1 chromosome, complete genomealkanesulfonate ABC transporter substrate binding protein1e-1170.9
NC_012914:5618000:5645455564545556464801026Paenibacillus sp. JDR-2, complete genomeNMT1/THI5 like domain protein2e-1066.6
NC_008596:1302000:1302007130200713034641458Mycobacterium smegmatis str. MC2 155, complete genomeABC transporter substrate-binding protein1e-0964.7
NC_020291:1535402:1552909155290915539551047Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomenitrate/sulfonate/bicarbonate ABC transport system substrate binding protein SsuA2e-0963.5
NC_007509:644000:648999648999649997999Burkholderia sp. 383 chromosome 3, complete sequenceABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein3e-0963.2
NC_010581:561579:5789225789225799471026Beijerinckia indica subsp. indica ATCC 9039, complete genomeABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family, putative5e-0962.4
NC_015565:1163148:1165148116514811661881041Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein1e-0861.2
NC_008544:818730:820796820796821785990Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein1e-0860.8
NC_008060:1346581:136220513622051363194990Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein1e-0860.8
NC_011757:1246000:128058712805871281543957Methylobacterium chloromethanicum CM4, complete genomeNMT1/THI5 like domain protein1e-0860.8
NC_021182:4186515:4198028419802841990291002Clostridium pasteurianum BC1, complete genomeABC transporter, substrate-binding protein, aliphatic sulfonates family1e-0860.8
NC_013315:2531019:2562530256253025636211092Clostridium difficile CD196 chromosome, complete genomesulfonate ABC transporter solute-binding lipoprotein1e-0860.8
NC_017179:2539031:2570542257054225716331092Clostridium difficile BI1, complete genomesulfonate ABC transporter solute-binding lipoprotein1e-0860.8
NC_015565:1163148:1171741117174111727751035Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein1e-0860.5
NC_019673:9084045:9099799909979991008601062Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-0860.1
NC_015589:870804:8831768831768841981023Desulfotomaculum ruminis DSM 2154 chromosome, complete genomefamily 3 extracellular solute-binding protein3e-0859.7
NC_008027:3677500:3685745368574536868121068Pseudomonas entomophila L48, complete genomeABC transporter, periplasmic sulfonate-binding protein3e-0859.7
NC_009654:4624459:4635671463567146366811011Marinomonas sp. MWYL1, complete genomeNMT1/THI5-like domain-containing protein5e-0858.9
NC_012791:4079062:410154141015414102530990Variovorax paradoxus S110 chromosome 1, complete genomeextracellular solute-binding protein family 35e-0858.9
NC_015172:951550:9572569572569583621107Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein6e-0858.5
NC_014733:107394:1293661293661304691104Methylovorus sp. MP688 chromosome, complete genomesulfonate ABC transporter, periplasmic sulfonate-binding protein ssua6e-0858.5
NC_002678:7004370:7030549703054970315771029Mesorhizobium loti MAFF303099, complete genomehypothetical protein8e-0755.1
NC_013894:672840:680907680907681881975Thermocrinis albus DSM 14484 chromosome, complete genomealiphatic sulfonates family ABC transporter, periplasmic ligand-binding protein7e-0755.1
NC_018750:7653000:7675312767531276766731362Streptomyces venezuelae ATCC 10712, complete genomeATP transporter periplasmic binding protein7e-0755.1
NC_015942:63440:7313173131744771347Acidithiobacillus ferrivorans SS3 chromosome, complete genomeABC transporter sulfonate/nitrate transport system substrate-binding protein1e-0654.3
NC_017297:3546467:3551307355130735524071101Clostridium botulinum F str. 230613 chromosome, complete genomeputative lipoprotein1e-0654.3
NC_015172:1429266:1441303144130314423431041Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeextracellular solute-binding protein family 32e-0653.5
NC_015565:1163148:1169787116978711707941008Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein6e-0652
NC_010623:72500:8346583465845681104Burkholderia phymatum STM815 chromosome 2, complete sequenceNMT1/THI5 like domain protein7e-0651.6
NC_009515:1481051:149339314933931494343951Methanobrevibacter smithii ATCC 35061, complete genomenitrate/sulfonate/bicarbonate ABC transporter, substrate-binding component, TauA7e-0651.6
NC_006361:2920028:2920028292002829210681041Nocardia farcinica IFM 10152, complete genomehypothetical protein7e-0651.6