Pre_GI: BLASTP Hits

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Query: NC_009439:4404942:4427124 Pseudomonas mendocina ymp, complete genome

Start: 4427124, End: 4428125, Length: 1002

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006510:1995916:2015861201586120168891029Geobacillus kaustophilus HTA426, complete genomeC4-dicarboxylate transport system (C4-dicarboxylate-binding protein)7e-50197
NC_014206:1618988:1621954162195416230121059Geobacillus sp. C56-T3 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP1e-49197
NC_019978:2532640:2546495254649525475501056Halobacteroides halobius DSM 5150, complete genometripartite ATP-independent periplasmic transporter solute receptor, DctP family9e-43174
NC_015565:1511426:1528392152839215294141023Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeTRAP dicarboxylate transporter subunit DctP4e-41169
NC_007503:1111457:1159123115912311601901068Carboxydothermus hydrogenoformans Z-2901, complete genomeTRAP dicarboxylate transporter, DctP subunit8e-41167
NC_011992:1968258:1995100199510019961101011Acidovorax ebreus TPSY, complete genomeTRAP dicarboxylate transporter, DctP subunit1e-40167
NC_016048:308342:3402363402363412941059Oscillibacter valericigenes Sjm18-20, complete genomeputative transporter4e-39162
NC_020911:3046916:306024730602473061245999Octadecabacter antarcticus 307, complete genomeTRAP transporter periplasmatic solute-binding protein DctP3e-36152
NC_011830:4951716:4951716495171649527471032Desulfitobacterium hafniense DCB-2, complete genomeTRAP dicarboxylate transporter, DctP subunit2e-35150
NC_007963:2777066:2785741278574127867511011Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter, DctP subunit3e-35149
NC_020911:18500:362213622137201981Octadecabacter antarcticus 307, complete genomeTRAP transporter periplasmatic solute-binding protein DctP2e-34146
NC_014328:1263139:1264910126491012670722163Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative C4-dicarboxylate transporter protein/chemotaxis domain-containing protein5e-34145
NC_016641:2815974:2835933283593328369671035Paenibacillus terrae HPL-003 chromosome, complete genomeputative C4-dicarboxylate ABC transporter substrate binding protein4e-33142
NC_012491:1293086:1294546129454612955951050Brevibacillus brevis NBRC 100599, complete genomeprobable C4-dicarboxylate ABC transporter substrate binding protein5e-33141
NC_009454:1389974:1396060139606013970881029Pelotomaculum thermopropionicum SI, complete genomeTRAP-type C4-dicarboxylate transport system, periplasmic component1e-32140
NC_016048:3856665:3866163386616338672241062Oscillibacter valericigenes Sjm18-20, complete genomeputative transporter3e-32139
NC_014966:1668822:169116016911601692143984Vibrio vulnificus MO6-24/O chromosome II, complete sequenceTRAP-type C4-dicarboxylate transporter periplasmic protein1e-30134
NC_015519:1888917:1890773189077318917981026Tepidanaerobacter sp. Re1 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP4e-30132
NC_014532:2664139:267512626751262676121996Halomonas elongata DSM 2581, complete genomeTRAP transporter substrate-binding protein5e-30131
NC_017188:419000:4363154363154373671053Bacillus amyloliquefaciens TA208 chromosome, complete genomeDctB2e-29130
NC_017190:424000:4410484410484421001053Bacillus amyloliquefaciens LL3 chromosome, complete genomeC4-dicarboxylate-binding protein2e-29130
NC_007509:1043602:104900310490031049989987Burkholderia sp. 383 chromosome 3, complete sequenceTRAP dicarboxylate transporter- DctP subunit1e-29130
NC_014118:1592000:160360916036091604589981Burkholderia sp. CCGE1002 chromosome chromosome 2, completeExtracellular solute-binding protein, family 71e-29130
NC_009997:3483157:3500296350029635013151020Shewanella baltica OS195, complete genomeTRAP dicarboxylate transporter, DctP subunit1e-29130
NC_016901:3430401:3447508344750834485271020Shewanella baltica OS678 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP1e-29130
NC_008392:666000:683207683207684193987Burkholderia cepacia AMMD chromosome 3, complete sequenceTRAP dicarboxylate transporter, DctP subunit1e-29130
NC_007778:3784104:380823938082393809237999Rhodopseudomonas palustris HaA2, complete genomeTRAP dicarboxylate transporter DctP subunit1e-29130
NC_015589:2447132:2452948245294824539821035Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeTRAP dicarboxylate transporter DctP subunit4e-29129
NC_014206:1618988:1618988161898816200161029Geobacillus sp. C56-T3 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP7e-29128
NC_016593:762216:7896097896097906491041Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeTRAP dicarboxylate transporter subunit DctP5e-29128
NC_017191:425000:4423454423454433971053Bacillus amyloliquefaciens XH7 chromosome, complete genomeC4-dicarboxylate binding protein1e-28127
NC_014323:4355266:4372829437282943738631035Herbaspirillum seropedicae SmR1 chromosome, complete genomeTRAP-type C4-dicarboxylate transport system periplasmic protein1e-28127
NC_010552:2454776:2473745247374524747761032Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceTRAP dicarboxylate transporter, DctP subunit1e-28127
NC_003911:1791878:1839928183992818409501023Silicibacter pomeroyi DSS-3, complete genomeTRAP dicarboxylate transporter, DctP subunit, putative1e-28127
NC_020210:661236:671267671267672223957Geobacillus sp. GHH01, complete genome2,3-diketo-L-gulonate-binding periplasmic protein4e-28125
NC_017187:325229:340255340255341247993Arcobacter butzleri ED-1, complete genomeC4-dicarboxylate-binding periplasmic protein4e-28125
NC_011894:3161289:3178584317858431796031020Methylobacterium nodulans ORS 2060, complete genomeTRAP dicarboxylate transporter, DctP subunit1e-27124
NC_017082:3717939:3721549372154937225801032Bradyrhizobium sp. S23321, complete genomeputative TRAP-type C4-dicarboxylate transport system7e-28124
NC_006582:4256915:425691542569154257904990Bacillus clausii KSM-K16, complete genomeC4-dicarboxylate transport system substrate-binding protein2e-27122
NC_011892:352652:365576365576366562987Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completeTRAP dicarboxylate transporter, DctP subunit3e-27122
NC_004463:2344128:2344128234412823451951068Bradyrhizobium japonicum USDA 110, complete genomeprobable ABC transporter substrate-binding protein4e-27122
NC_017249:7917586:7936988793698879380131026Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-27122
NC_014166:1179335:1189541118954111905541014Arcobacter nitrofigilis DSM 7299 chromosome, complete genomefamily 7 extracellular solute-binding protein3e-26119
NC_015914:2230076:225379622537962254788993Cyclobacterium marinum DSM 745 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP3e-25115
NC_016513:1761830:176842317684231769415993Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeDctP protein3e-25115
NC_015152:2887414:2897742289774228987461005Spirochaeta sp. Buddy chromosome, complete genomeTRAP dicarboxylate transporter DctP subunit9e-25114
NC_013223:2609697:263872826387282639726999Desulfohalobium retbaense DSM 5692, complete genomeTRAP dicarboxylate transporter, DctP subunit2e-24113
NC_014041:3197192:320316532031653204151987Zunongwangia profunda SM-A87 chromosome, complete genomeputative dicarboxylate-binding periplasmic protein4e-24112
NC_014551:442135:459159459159459965807Bacillus amyloliquefaciens DSM 7, complete genomeC4-dicarboxylate-binding protein dctB Flags: Precursor1e-23110
NC_009778:4188000:422889942288994229882984Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-23109
NC_007963:1190847:121161812116181212556939Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter, DctP subunit7e-23108
NC_014532:2989185:300087330008733001859987Halomonas elongata DSM 2581, complete genomeTRAP transporter substrate-binding protein1e-22107
NC_015458:1692401:169891516989151699898984Pusillimonas sp. T7-7 chromosome, complete genomeTRAP dicarboxylate transporter, DctP subunit9e-23107
NC_010511:1351000:1355534135553413565561023Methylobacterium sp. 4-46 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP3e-22106
NC_016048:3667890:3676205367620536772541050Oscillibacter valericigenes Sjm18-20, complete genomeputative transporter5e-22105
NC_009832:110239:1319071319071329201014Serratia proteamaculans 568, complete genomeTRAP dicarboxylate transporter, DctP subunit8e-22104
NC_010634:1916000:195309619530961954088993Yersinia pseudotuberculosis PB1/+, complete genomeTRAP dicarboxylate transporter, DctP subunit3e-21102
NC_006155:1916426:195311219531121954104993Yersinia pseudotuberculosis IP 32953, complete genomeTRAP-T family C4-dicarboxylate transporter, periplasmic binding protein (DctP subunit)3e-21102
NC_015573:162000:1721951721951732321038Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP7e-21101
NC_013740:2218215:2228533222853322295461014Acidaminococcus fermentans DSM 20731, complete genomeTRAP dicarboxylate transporter, DctP subunit4e-2099.4
NC_015224:1914833:192134819213481922325978Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative C4-dicarboxylate transporter,periplasmic protein4e-2099
NC_009050:604950:627975627975628964990Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceTRAP dicarboxylate transporter, DctP subunit7e-2098.2
NC_013855:558831:5737265737265747661041Azospirillum sp. B510 plasmid pAB510a, complete sequenceTRAP dicarboxylate transporter4e-1995.5
NC_011661:1807101:180894618089461809941996Dictyoglomus turgidum DSM 6724, complete genomeTRAP dicarboxylate transporter- DctP subunit2e-1893.2
NC_009457:1444449:148209614820961483061966Vibrio cholerae O395 chromosome 2, complete sequenceC4-dicarboxylate-binding periplasmic protein3e-1892.8
NC_012578:1838470:187612618761261877091966Vibrio cholerae M66-2 chromosome I, complete sequenceC4-dicarboxylate-binding periplasmic protein3e-1892.8
NC_012582:2013515:201351520135152014480966Vibrio cholerae O395 chromosome chromosome I, complete sequenceC4-dicarboxylate-binding periplasmic protein3e-1892.8
NC_012668:1688500:171755017175501718515966Vibrio cholerae MJ-1236 chromosome 1, complete sequenceTRAP-type transport system periplasmic component3e-1892.8
NC_016445:1363831:140039314003931401358966Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeC4-dicarboxylate-binding periplasmic protein3e-1892.8
NC_017270:1755552:176774417677441768709966Vibrio cholerae LMA3984-4 chromosome chromosome I, completeTRAP-type transport system, periplasmic protein4e-1892.4
NC_014364:4488875:4510905451090545119091005Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeTRAP dicarboxylate transporter, DctP subunit6e-1891.7
NC_008209:695269:715745715745716740996Roseobacter denitrificans OCh 114, complete genomeC4-dicarboxylate-binding protein, putative7e-1891.7
NC_007644:416000:4256164256164266231008Moorella thermoacetica ATCC 39073, complete genomeTRAP dicarboxylate transporter, DctP subunit1e-1790.5
NC_020908:1920169:193008319300831931063981Octadecabacter arcticus 238, complete genomeTRAP transporter DctP subunit2e-1789.7
NC_007963:3574000:358199235819923582966975Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter- DctP subunit2e-1687
NC_021066:3028421:3048132304813230491691038Raoultella ornithinolytica B6, complete genomehypothetical protein4e-1685.5
NC_014011:1354261:1371285137128513723221038Aminobacterium colombiense DSM 12261 chromosome, complete genomeExtracellular solute-binding protein, family 76e-1685.1
NC_008260:2442000:2452364245236424533861023Alcanivorax borkumensis SK2, complete genomeTRAP dicarboxylate transporter, extracellular solute binding protein7e-1685.1
NC_016943:4194002:4201214420121442022901077Blastococcus saxobsidens DD2, complete genomeTRAP-type C4-dicarboxylate transport system, Extracellular solute-binding protein1e-1584
NC_014758:1387470:1408979140897914100461068Calditerrivibrio nitroreducens DSM 19672 chromosome, completeextracellular solute-binding protein, family 73e-1582.8
NC_015145:92397:1200461200461210861041Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometripartite ATP-independent periplasmic transporter solute receptor, DctP family5e-1582
NC_004193:3530000:3539179353917935402011023Oceanobacillus iheyensis HTE831, complete genomeC4-dicarboxylate transport system C4-dicarboxylate-binding protein6e-1581.6
NC_008212:1386834:1412554141255414136781125Haloquadratum walsbyi DSM 16790, complete genomeTRAP-type C4-dicarboxylate transport system,periplasmic component DctP (YiaO)1e-1480.9
NC_016642:1990684:200975720097572010731975Pseudovibrio sp. FO-BEG1 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP6e-1375.1
NC_015730:921735:921735921735922709975Roseobacter litoralis Och 149 chromosome, complete genomeputative TRAP transporter subunit DctP1e-1274.3
NC_010506:4404377:4414103441410344151971095Shewanella woodyi ATCC 51908, complete genomeTRAP dicarboxylate transporter- DctP subunit1e-1274.3
NC_016943:4194002:4236501423650142375921092Blastococcus saxobsidens DD2, complete genomeTRAP dicarboxylate transporter subunit DctP1e-1274.3
NC_007969:1076287:1077587107758710786391053Psychrobacter cryohalolentis K5, complete genomeTRAP dicarboxylate transporter- DctP subunit2e-1170.5
NC_009654:304000:3190013190013200141014Marinomonas sp. MWYL1, complete genomeTRAP dicarboxylate transporter- DctP subunit1e-1067.8
NC_008043:86470:1051911051911062371047Silicibacter sp. TM1040 mega plasmid, complete sequenceTRAP dicarboxylate transporter- DctP subunit2e-1067.4
NC_015497:2859724:2874240287424028753161077Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeExtracellular solute-binding protein, family 74e-1065.9
NC_014364:3238374:324120132412013242199999Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeExtracellular solute-binding protein, family 74e-1065.9
NC_015684:3157941:317810531781053179091987Oligotropha carboxidovorans OM5 chromosome, complete genomeTRAP transport system, substrate-binding protein5e-1065.5
NC_015578:3442866:3459180345918034601931014Treponema primitia ZAS-2 chromosome, complete genomeputative TRAP dicarboxylate transporter subunit DctP1e-0964.3
NC_002505:514732:5192985192985203771080Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeextracellular solute-binding protein, putative2e-0963.5
NC_012668:83641:99962999621010411080Vibrio cholerae MJ-1236 chromosome 1, complete sequenceTRAP transporter solute receptor2e-0963.5
NC_016445:2938887:2943453294345329445321080Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeputative extracellular solute-binding protein2e-0963.5
NC_016944:514742:5193085193085203871080Vibrio cholerae IEC224 chromosome I, complete sequenceextracellular solute-binding protein2e-0963.5
NC_013166:194614:1954691954691965841116Kangiella koreensis DSM 16069, complete genomeTRAP dicarboxylate transporter- DctP subunit3e-0963.2
NC_016642:1913432:1936277193627719372961020Pseudovibrio sp. FO-BEG1 chromosome, complete genomeTRAP dicarboxylate transporter subunit DctP3e-0963.2
NC_006569:370846:3762033762033772221020Silicibacter pomeroyi DSS-3 megaplasmid, complete sequenceTRAP dicarboxylate family transporter, DctP subunit4e-0962.8
NC_005296:2860000:2883903288390328849221020Rhodopseudomonas palustris CGA009, complete genomeTrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein6e-0962
NC_007963:317291:3172913172913183551065Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter- DctP subunit2e-0860.5
NC_008596:3404832:3424110342411034252101101Mycobacterium smegmatis str. MC2 155, complete genomebacterial extracellular solute-binding protein, family protein 72e-0860.5
NC_014011:472650:4898554898554909221068Aminobacterium colombiense DSM 12261 chromosome, complete genomeExtracellular solute-binding protein, family 72e-0860.1
NC_007645:3688000:3688251368825136892671017Hahella chejuensis KCTC 2396, complete genomeTRAP-type mannitol/chloroaromatic compound transport system, periplasmic component4e-0859.3
NC_016629:3789554:3828241382824138292871047Desulfovibrio africanus str. Walvis Bay chromosome, completeextracellular solute-binding protein7e-0858.5
NC_015573:813000:8433328433328443841053Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomefamily 7 extracellular solute-binding protein9e-0858.2
NC_015458:2614108:2629051262905126302441194Pusillimonas sp. T7-7 chromosome, complete genomehypothetical protein1e-0654.7
NC_007963:2777066:2792565279256527936471083Chromohalobacter salexigens DSM 3043, complete genomeTRAP dicarboxylate transporter- DctP subunit1e-0653.9
NC_017192:88940:8894088940900041065Arcobacter sp. L, complete genomeTRAP dicarboxylate ABC transporter substrate binding component2e-0653.5
NC_002928:507749:5461185461185472991182Bordetella parapertussis 12822, complete genomehypothetical protein3e-0653.1
NC_017223:51180:6748367483686641182Bordetella pertussis CS chromosome, complete genomehypothetical protein4e-0652.8
NC_002929:52500:6748367483686641182Bordetella pertussis Tohama I, complete genomehypothetical protein4e-0652.8
NC_002927:506183:5474595474595486401182Bordetella bronchiseptica RB50, complete genomehypothetical protein6e-0652
NC_015259:485015:5590315590315600831053Polymorphum gilvum SL003B-26A1 chromosome, complete genomePutative solute-binding periplasmic protein9e-0651.2