Pre_GI: BLASTP Hits

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Query: NC_009439:4404942:4418316 Pseudomonas mendocina ymp, complete genome

Start: 4418316, End: 4419599, Length: 1284

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015556:4025559:4028049402804940293321284Pseudomonas fulva 12-X chromosome, complete genomeConserved hypothetical protein CHP034400773
NC_019940:1:5922592272021281Thioflavicoccus mobilis 8321 chromosome, complete genomehypothetical protein4e-125448
NC_014098:1258559:1262650126265012639451296Bacillus tusciae DSM 2912 chromosome, complete genomeprotein of unknown function DUF3233e-113409
NC_020541:2850831:2867255286725528685051251Rhodanobacter sp. 2APBS1, complete genomeTIGR03440 family protein3e-113409
NC_016631:1329702:1341331134133113426051275Granulicella mallensis MP5ACTX8 chromosome, complete genomehypothetical protein4e-107388
NC_017080:3552355:3574349357434935757371389Phycisphaera mikurensis NBRC 102666, complete genomehypothetical protein2e-96352
NC_020302:2190500:2207006220700622082501245Corynebacterium halotolerans YIM 70093 = DSM 44683, completehypothetical protein3e-82305
NC_010572:802269:8238078238078252101404Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-44180
NC_003295:998000:99918199918110004791299Ralstonia solanacearum GMI1000, complete genomehypothetical protein1e-28128
NC_007973:2773427:2789800278980027910561257Ralstonia metallidurans CH34 chromosome 1, complete sequenceprotein of unknown function DUF3232e-25117
NC_010676:304405:3205723205723218911320Burkholderia phytofirmans PsJN chromosome 2, complete sequenceprotein of unknown function DUF3234e-24112
NC_014118:1528851:1531393153139315326881296Burkholderia sp. CCGE1002 chromosome chromosome 2, completeprotein of unknown function DUF3235e-22105
NC_011146:63912:6632766327684322106Geobacter bemidjiensis Bem, complete genomeprotein of unknown function DUF3237e-1479
NC_008740:443274:4432744432744454242151Marinobacter aquaeolei VT8, complete genomeprotein of unknown function DUF3237e-1272
NC_014098:1670327:168067516806751681454780Bacillus tusciae DSM 2912 chromosome, complete genomeprotein of unknown function DUF3234e-1169.7
NC_009523:1101214:111680911168091117564756Roseiflexus sp. RS-1 chromosome, complete genomehypothetical protein4e-1169.7
NC_014158:233733:2419672419672430221056Tsukamurella paurometabola DSM 20162 chromosome, complete genomeprotein of unknown function DUF3231e-1067.8
NC_014355:139324:1606941606941617521059Candidatus Nitrospira defluvii, complete genomehypothetical protein2e-0964.3
NC_014355:139324:159667159667160629963Candidatus Nitrospira defluvii, complete genomehypothetical protein2e-0963.9
NC_012214:1:1213121333722160Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein3e-0963.5
NC_017082:3717939:374680737468073747730924Bradyrhizobium sp. S23321, complete genomehypothetical protein3e-0860.5
NC_017249:8165826:8194409819440981970782670Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-0859.7
NC_010694:1:1234123433932160Erwinia tasmaniensis, complete genomeConserved hypothetical protein (DUF323)7e-0858.9
NC_008595:5168941:518374451837445184622879Mycobacterium avium 104, complete genomesulfatase-modifying factor 11e-0758.2
NC_020133:5020500:504097150409715041852882Mycobacterium liflandii 128FXT, complete genomeFormylglycine-generating sulfatase enzyme1e-0758.2
NC_009953:2302337:231758323175832318527945Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein1e-0757.8
NC_018748:1443176:145860414586041459338735Emticicia oligotrophica DSM 17448 chromosome, complete genomeSulphatase-modifying factor protein3e-0756.6
NC_013959:2666321:2689003268900326900611059Sideroxydans lithotrophicus ES-1 chromosome, complete genomeNon-specific serine/threonine protein kinase4e-0756.2
NC_010172:573046:573046573046574023978Methylobacterium extorquens PA1, complete genomeprotein of unknown function DUF3231e-0654.7
NC_012669:832555:837114837114838103990Beutenbergia cavernae DSM 12333, complete genomeprotein of unknown function DUF3232e-0654.3
NC_011060:1288862:129344212934421294239798Pelodictyon phaeoclathratiforme BU-1, complete genomeprotein of unknown function DUF3233e-0653.5
NC_015062:99969:1167071167071188482142Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequencehypothetical protein3e-0653.1
NC_010803:1132500:113763111376311138428798Chlorobium limicola DSM 245, complete genomeprotein of unknown function DUF3234e-0653.1