Pre_GI: BLASTP Hits

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Query: NC_009439:3394174:3412432 Pseudomonas mendocina ymp, complete genome

Start: 3412432, End: 3413274, Length: 843

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:3701000:371348537134853714327843Pseudomonas mendocina NK-01 chromosome, complete genomehypothetical protein2e-92338
NC_008800:2013450:202678520267852027630846Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative inner membrane protein8e-34144
NC_020064:1409596:143288014328801433707828Serratia marcescens FGI94, complete genomehypothetical protein6e-32137
NC_012660:3689223:368922336892233690050828Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein8e-31134
NC_008752:2334511:235104823510482351890843Acidovorax avenae subsp. citrulli AAC00-1, complete genomeprotein of unknown function DUF6, transmembrane7e-24111
NC_018750:3249756:326639632663963267247852Streptomyces venezuelae ATCC 10712, complete genomeputative integral membrane protein5e-21101
NC_015677:3339181:334594233459423346715774Ramlibacter tataouinensis TTB310 chromosome, complete genometransporter4e-2099
NC_009468:38112:543865438655231846Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequencehypothetical protein9e-1580.9
NC_015312:5876957:589764258976425898502861Pseudonocardia dioxanivorans CB1190 chromosome, complete genomehypothetical protein3e-1272.8