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Query: NC_009439:3104000:3118803 Pseudomonas mendocina ymp, complete genome

Start: 3118803, End: 3119465, Length: 663

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009438:3019552:303639430363943037020627Shewanella putrefaciens CN-32 chromosome, complete genomeputative sugar nucleotidyltransferase9e-27120
NC_011883:1182000:119133211913321191970639Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,hypothetical protein6e-22103
NC_014924:725380:738183738183738794612Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeputative sugar nucleotidyltransferase2e-1995.5
NC_013757:1343396:134260613426061343406801Geodermatophilus obscurus DSM 43160, complete genomeUDP-N-acetylglucosamine pyrophosphorylase related protein2e-0859.3
NC_007925:4294472:430495843049584305722765Rhodopseudomonas palustris BisB18, complete genomeNucleotidyl transferase5e-0754.3
NC_008789:835909:858803858803859552750Halorhodospira halophila SL1, complete genomeNucleotidyl transferase1e-0653.5
NC_015572:1252000:128525012852501286038789Methylomonas methanica MC09 chromosome, complete genomeNucleotidyl transferase3e-0652.4