Pre_GI: BLASTP Hits

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Query: NC_009439:20545:27524 Pseudomonas mendocina ymp, complete genome

Start: 27524, End: 28342, Length: 819

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012660:819381:827789827789828604816Pseudomonas fluorescens SBW25 chromosome, complete genomeputative type III secretion protein8e-70263
NC_020064:4125500:414224441422444143014771Serratia marcescens FGI94, complete genometype III secretion apparatus lipoprotein, YscJ/HrcJ family8e-60230
NC_007645:3343815:334381533438153344612798Hahella chejuensis KCTC 2396, complete genomeType III secretory pathway, lipoprotein EscJ3e-33142
NC_017249:8283701:828971882897188290581864Bradyrhizobium japonicum USDA 6, complete genomeRhcJ protein2e-31135
NC_020209:47504:104511104511104900390Pseudomonas poae RE*1-1-14, complete genometype III secretion apparatus lipoprotein RscJ7e-30130
NC_002678:5139557:515537151553715156210840Mesorhizobium loti MAFF303099, complete genomeNODULATION PROTEIN NOLT5e-29128
NC_010688:3487000:350844835084483509212765Xanthomonas campestris pv. campestris, complete genomeHrcJ protein5e-29128
NC_003919:457482:479630479630480391762Xanthomonas axonopodis pv. citri str. 306, complete genomeHrcJ protein5e-28124
NC_012779:916000:931839931839932570732Edwardsiella ictaluri 93-146, complete genometype III secretion apparatus lipoprotein, YscJ/HrcJ family, putative8e-23107
NC_011149:1710601:172495817249581725707750Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion apparatus lipoprotein, YscJ/HrcJ family2e-21103
NC_011083:1476894:149579214957921496541750Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,type III secretion apparatus lipoprotein, YscJ/HrcJ family2e-21103
NC_006905:1509093:152796515279651528714750Salmonella enterica subsp. enterica serovar Choleraesuis strSecretion system apparatus SsaJ2e-21103
NC_011080:1470794:148971714897171490466750Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion apparatus lipoprotein, YscJ/HrcJ family2e-21103
NC_010102:1616530:163088716308871631576690Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-21103
NC_012125:2360815:237517223751722375861690Salmonella enterica subsp. enterica serovar Paratyphi C strainpathogenicity island lipoprotein2e-21103
NC_016831:1236786:125571012557101256399690Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative pathogenicity island lipoprotein2e-21103
NC_016857:1428201:144712914471291447878750Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74needle complex inner membrane lipoprotein2e-21102
NC_016856:1481325:150025315002531501002750Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sneedle complex inner membrane lipoprotein2e-21102
NC_016810:1428201:144712914471291447878750Salmonella enterica subsp. enterica serovar Typhimurium strputative pathogenicity island lipoprotein2e-21102
NC_003197:1471349:149027714902771491026750Salmonella typhimurium LT2, complete genomeneedle complex inner membrane lipoprotein2e-21102
NC_016860:1469066:148796414879641488713750Salmonella enterica subsp. enterica serovar Typhimurium strneedle complex inner membrane lipoprotein3e-21102
NC_011094:1435347:145418114541811454930750Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion apparatus lipoprotein, YscJ/HrcJ family protein3e-21102
NC_011274:1763676:177803317780331778782750Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity island lipoprotein4e-21102
NC_016863:1429516:144844414484441449193750Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1needle complex inner membrane lipoprotein2e-21102
NC_017046:1428272:144726014472601447949690Salmonella enterica subsp. enterica serovar Typhimurium str. 798pathogenicity island lipoprotein2e-21102
NC_004631:1325817:134468313446831345432750Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative pathogenicity island lipoprotein2e-21102
NC_003198:1621347:163570416357041636453750Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative pathogenicity island lipoprotein2e-21102
NC_011294:1723852:173820917382091738958750Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity island lipoprotein2e-21102
NC_011205:1852665:186702218670221867771750Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type III secretion apparatus lipoprotein, YscJ/HrcJ family2e-21102
NC_011147:1502096:151645315164531517202750Salmonella enterica subsp. enterica serovar Paratyphi A strpathogenicity island lipoprotein2e-21102
NC_006511:1506915:152127215212721522021750Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative pathogenicity island lipoprotein2e-21102
NC_016832:1324820:134371613437161344405690Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Secretion system apparatus lipoprotein ssaJ2e-21102
NC_014366:2513352:252556525255652526299735Gamma proteobacterium HdN1, complete genomeType III secretion pathway protein7e-21101
NC_010067:1507823:152575715257571526506750Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-2099.4
NC_014012:2565329:257223625722362572967732Shewanella violacea DSS12, complete genometype III secretion system apparatus lipoprotein6e-1891.3
NC_005085:2774370:278815527881552788880726Chromobacterium violaceum ATCC 12472, complete genometype III secretion system apparatus lipoprotein2e-1685.9
NC_015761:2726000:273522527352252735983759Salmonella bongori NCTC 12419, complete genomepathogenicity 1 island effector protein7e-1684.7
NC_011149:2912219:292352429235242924282759Salmonella enterica subsp. enterica serovar Agona str. SL483,type III secretion apparatus lipoprotein, YscJ/HrcJ family1e-1584
NC_011205:3050235:305938730593873060145759Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853type III secretion apparatus lipoprotein, YscJ/HrcJ family1e-1583.6
NC_011147:2814664:282507828250782825836759Salmonella enterica subsp. enterica serovar Paratyphi A strpathogenicity island 1 effector protein1e-1583.6
NC_011094:2913500:292220229222022922960759Salmonella enterica subsp. enterica serovar Schwarzengrund strtype III secretion apparatus lipoprotein, YscJ/HrcJ family protein1e-1583.6
NC_010102:2967464:297797829779782978736759Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1583.6
NC_006905:2960260:296852329685232969281759Salmonella enterica subsp. enterica serovar Choleraesuis strcell invasion protein; lipoprotein, may link inner and outer membranes1e-1583.6
NC_011083:2980356:298951029895102990268759Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,type III secretion apparatus lipoprotein, YscJ/HrcJ family1e-1583.6
NC_006511:2819128:282954228295422830300759Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpathogenicity 1 island effector protein1e-1583.6
NC_011080:2982346:299150029915002992258759Salmonella enterica subsp. enterica serovar Newport str. SL254,type III secretion apparatus lipoprotein, YscJ/HrcJ family1e-1583.6
NC_003197:3005842:301499630149963015754759Salmonella typhimurium LT2, complete genomeneedle complex inner membrane lipoprotein1e-1583.6
NC_010067:84093:987409874099498759Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-1583.6
NC_011274:2881306:289046028904602891218759Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91pathogenicity 1 island effector protein1e-1583.6
NC_011294:2890500:289965528996552900413759Salmonella enterica subsp. enterica serovar Enteritidis strpathogenicity 1 island effector protein1e-1583.6
NC_012125:2938519:294890729489072949665759Salmonella enterica subsp. enterica serovar Paratyphi C strainpathogenicity 1 island effector protein1e-1583.6
NC_016832:2829767:284016628401662840924759Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-1583.6
NC_003198:2856596:286701028670102867768759Salmonella enterica subsp. enterica serovar Typhi str. CT18,pathogenicity 1 island effector protein1e-1583.6
NC_004631:2842453:285286728528672853625759Salmonella enterica subsp. enterica serovar Typhi Ty2, completepathogenicity 1 island effector protein1e-1583.6
NC_017046:3027161:303631230363123037070759Salmonella enterica subsp. enterica serovar Typhimurium str. 798type III secretion system apparatus1e-1583.6
NC_016863:2974333:298348629834862984244759Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1needle complex inner membrane lipoprotein1e-1583.6
NC_016860:3029272:303842630384263039184759Salmonella enterica subsp. enterica serovar Typhimurium strpathogenicity 1 island effector protein1e-1583.6
NC_016857:3028421:303757230375723038330759Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74needle complex inner membrane lipoprotein1e-1583.6
NC_016856:3026426:303523330352333035991759Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sneedle complex inner membrane lipoprotein1e-1583.6
NC_016831:2867766:287691928769192877677759Salmonella enterica subsp. enterica serovar Gallinarum/pullorumpathogenicity 1 island effector protein1e-1583.6
NC_016810:3028421:303757230375723038330759Salmonella enterica subsp. enterica serovar Typhimurium strtype III secretion system apparatus1e-1583.6
NC_013961:851044:859553859553860320768Erwinia amylovora, complete genomeLipoprotein PrgK precursor2e-1376.6
CU928145:3196173:321371132137113214445735Escherichia coli 55989 chromosome, complete genomePutative Type III secretion system lipoprotein EprK5e-1375.1
CU928160:3030324:304786230478623048596735Escherichia coli IAI1 chromosome, complete genomePutative Type III secretion system lipoprotein EprK5e-1375.1
NC_009801:3175714:319325131932513193985735Escherichia coli E24377A, complete genometype III secretion apparatus lipoprotein EprK5e-1375.1
NC_011748:3196173:321371132137113214445735Escherichia coli 55989, complete genomePutative Type III secretion system lipoprotein EprK5e-1375.1
NC_011415:3217796:323533432353343236068735Escherichia coli SE11 chromosome, complete genomeputative lipoprotein of type III secretion apparatus5e-1375.1
NC_011741:3030324:304786230478623048596735Escherichia coli IAI1 chromosome, complete genomeputative Type III secretion system lipoprotein EprK5e-1375.1
NC_013361:3867558:388509638850963885830735Escherichia coli O26:H11 str. 11368 chromosome, complete genometype III secretion system lipoprotein EprK5e-1375.1
NC_013364:3552284:356982835698283570562735Escherichia coli O111:H- str. 11128, complete genometype III secretion system lipoprotein EprK5e-1375.1
NC_013722:1689125:171059617105961711483888Xanthomonas albilineans, complete genomeprobable xanthomonas secretion apparatus protein5e-1375.1
NC_011751:3285646:330342933034293304163735Escherichia coli UMN026 chromosome, complete genomeputative type III secretion system lipoprotein EprK8e-1374.3
NC_002695:3702344:371920437192043719938735Escherichia coli O157:H7 str. Sakai, complete genomeEprK1e-1273.9
NC_002655:3769643:378650437865043787238735Escherichia coli O157:H7 EDL933, complete genomeputative lipoprotein of type III secretion apparatus1e-1273.9
NC_011353:3805819:382360138236013824335735Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype III secretion apparatus lipoprotein EprK1e-1273.9
NC_013008:3761467:377832737783273779061735Escherichia coli O157:H7 str. TW14359 chromosome, complete genomelipoprotein of type III secretion apparatus1e-1273.9
CP002185:3167738:318665731866573187391735Escherichia coli W, complete genome2e-1273.2
CP002516:903241:918685918685919419735Escherichia coli KO11, complete genome2e-1273.2
NC_010468:906957:9224059224059239151511Escherichia coli ATCC 8739, complete genome9e-1270.9
AP010958:3669500:370024737002473700819573Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS structure protein EscJ1e-1170.5
NC_013353:3669500:370024737002473700819573Escherichia coli O103:H2 str. 12009, complete genomeT3SS structure protein EscJ1e-1170.5
NC_013361:5319497:534306153430615343633573Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS structure protein EscJ1e-1170.5
NC_002695:4584177:461034346103434610915573Escherichia coli O157:H7 str. Sakai, complete genomeEscJ5e-1168.6
NC_002655:4653160:467932646793264679898573Escherichia coli O157:H7 EDL933, complete genomeescJ5e-1168.6
NC_011353:4688000:471344747134474714019573Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype III secretion apparatus lipoprotein, YscJ/HrcJ family5e-1168.6
NC_011601:4096427:412410841241084124680573Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS structure protein EscJ5e-1168.6
NC_013008:4643825:466948846694884670060573Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeLEE-encoded type III secretion system factor5e-1168.6
NC_013364:3701895:374174937417493742321573Escherichia coli O111:H- str. 11128, complete genomeT3SS structure protein EscJ5e-1168.6
NC_013941:4470932:449784744978474498419573Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeEscJ5e-1168.6
NC_013971:1660144:167238916723891673168780Erwinia amylovora ATCC 49946 chromosome, complete genometype III secretion system lipoprotein7e-1168.2
NC_013961:1622616:163486116348611635640780Erwinia amylovora, complete genomeLipoprotein PrgK precursor7e-1168.2
NC_014377:1060000:1073721107372110752741554Thermosediminibacter oceani DSM 16646 chromosome, complete genomeflagellar M-ring protein FliF2e-1066.6
NC_010694:2138000:216820521682052168984780Erwinia tasmaniensis, complete genomeType III secretion system2e-1066.2
NC_012214:2221702:225552622555262256287762Erwinia pyrifoliae Ep1/96, complete genomeType III secretion system2e-1066.2
NC_020126:8080574:809283880928388093644807Myxococcus stipitatus DSM 14675, complete genomeYscJ/FliF family type III secretion lipoprotein8e-0961.2
NC_015589:1240197:1267884126788412694431560Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeflagellar M-ring protein FliF2e-0859.7
NC_011899:1807365:1809171180917118107301560Halothermothrix orenii H 168, complete genomeflagellar M-ring protein FliF3e-0859.3
NC_008536:435221:4352214352214369331713Solibacter usitatus Ellin6076, complete genomeflagellar M-ring protein FliF5e-0858.5
NC_020209:47504:513685136851628261Pseudomonas poae RE*1-1-14, complete genometype III secretion apparatus lipoprotein RscJ3e-0755.8
NC_019978:625476:6317716317716333151545Halobacteroides halobius DSM 5150, complete genomeflagellar basal-body M-ring protein/flagellar hook-basal body protein FliF3e-0755.8
NC_010424:1857062:1857062185706218586181557Candidatus Desulforudis audaxviator MP104C, complete genomeflagellar M-ring protein FliF4e-0755.5
NC_007912:2768363:2783820278382027854901671Saccharophagus degradans 2-40, complete genomeflagellar M-ring protein5e-0755.1
NC_009664:533021:5526955526955543081614Kineococcus radiotolerans SRS30216, complete genomeflagellar M-ring protein FliF5e-0755.1
NC_015186:1698000:1708766170876617103281563Acidiphilium multivorum AIU301, complete genomeflagellar M-ring protein FliF7e-0754.7
NC_009484:1627734:1638504163850416400661563Acidiphilium cryptum JF-5 chromosome, complete genomeflagellar M-ring protein FliF8e-0754.3
NC_013223:685628:6927666927666942801515Desulfohalobium retbaense DSM 5692, complete genomeflagellar M-ring protein FliF2e-0653.5
NC_013093:2599591:2603991260399126056701680Actinosynnema mirum DSM 43827, complete genomeflagellar M-ring protein FliF2e-0653.5
NC_009253:2615777:2628811262881126303761566Desulfotomaculum reducens MI-1 chromosome, complete genomeflagellar MS-ring protein2e-0653.1
NC_007503:861668:8769758769758785611587Carboxydothermus hydrogenoformans Z-2901, complete genomeflagellar M-ring protein FliF9e-0650.8