Pre_GI: BLASTP Hits

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Query: NC_009439:1297851:1332336 Pseudomonas mendocina ymp, complete genome

Start: 1332336, End: 1333340, Length: 1005

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015740:2407500:2423866242386624248731008Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein3e-173607
NC_011770:2499432:2512855251285525138561002Pseudomonas aeruginosa LESB58, complete genomePhage-related protein predicted endonuclease-like protein5e-170597
NC_010322:5293652:5302021530202153030251005Pseudomonas putida GB-1 chromosome, complete genomephage-like protein endonuclease-like protein1e-163575
NC_018080:2288700:2314463231446323154671005Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein2e-140498
NC_007298:1759881:1781164178116417821921029Dechloromonas aromatica RCB, complete genomehypothetical protein1e-137489
NC_014153:3084356:309883230988323099818987Thiomonas intermedia K12 chromosome, complete genomephage-type endonuclease2e-126451
NC_015422:3184823:3200291320029132013191029Alicycliphilus denitrificans K601 chromosome, complete genomephage-type endonuclease2e-123442
NC_009138:1843998:1865449186544918664501002Herminiimonas arsenicoxydans, complete genomeconserved hypothetical protein in putative prophage region2e-122439
NC_008782:2568027:2602657260265726036851029Acidovorax sp. JS42, complete genomehypothetical protein8e-119426
NC_008542:197500:224462224462225457996Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceGP471e-117422
NC_017506:1100679:1116535111653511175751041Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein7e-116417
NC_011000:2732330:277524827752482776243996Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein2e-115415
NC_011000:1262324:130772813077281308723996Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative phage-related protein1e-114413
NC_007651:3064530:313445231344523135447996Burkholderia thailandensis E264 chromosome I, complete sequencegp479e-114410
NC_017506:1222000:1233383123338312344231041Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein8e-114410
NC_018691:3525430:3556761355676135577621002Alcanivorax dieselolei B5 chromosome, complete genomePutative phage-type endonuclease domain protein3e-112405
NC_007651:72952:1277131277131287891077Burkholderia thailandensis E264 chromosome I, complete sequencegp471e-111402
NC_015381:1588742:160550416055041606499996Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein8e-111400
NC_013446:1648556:1697430169743016984671038Comamonas testosteroni CNB-2, complete genomehypothetical protein4e-110398
NC_009076:3564500:360056136005613601463903Burkholderia pseudomallei 1106a chromosome I, complete sequencegp472e-104379
NC_016147:2337244:2356166235616623571911026Pseudoxanthomonas spadix BD-a59 chromosome, complete genomehypothetical protein8e-103374
NC_007969:2885249:2887731288773128888371107Psychrobacter cryohalolentis K5, complete genomehypothetical protein7e-92337
NC_012691:2476223:250369125036912504674984Tolumonas auensis DSM 9187, complete genomephage-type endonuclease1e-84313
NC_015424:3520783:352182835218283522817990Aeromonas veronii B565 chromosome, complete genomehypothetical protein2e-79295
NC_008570:1143578:118475711847571185746990Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein7e-79294
NC_016002:2946702:296392329639232964906984Pseudogulbenkiania sp. NH8B, complete genomeYqaJ-like viral recombinase family protein9e-79293
NC_015379:908904:956893956893957534642Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Hypothetical protein4e-72271
NC_012559:768939:775693775693776430738Laribacter hongkongensis HLHK9, complete genomeYqaJ domain containing protein5e-51201
NC_020134:420500:425829425829426758930Clostridium stercorarium subsp. stercorarium DSM 8532, completephage-type endonuclease3e-49195
NC_017208:694500:699875699875700810936Bacillus thuringiensis serovar chinensis CT-43 chromosome, completehypothetical protein7e-46184
NC_011660:2924397:293070129307012931660960Listeria monocytogenes HCC23 chromosome, complete genomegp474e-45182
NC_003212:2413824:243746124374612438420960Listeria innocua Clip11262, complete genomegp47 [Bacteriophage A118]4e-45182
NC_012791:651480:660681660681661424744Variovorax paradoxus S110 chromosome 1, complete genomephage-type endonuclease8e-45181
NC_013411:597235:605043605043605978936Geobacillus sp. Y412MC61, complete genomephage-type endonuclease4e-44178
NC_014915:2963500:299795729979572998892936Geobacillus sp. Y412MC52 chromosome, complete genomephage-type endonuclease4e-44178
NC_003212:57061:831268312684085960Listeria innocua Clip11262, complete genomehypothetical protein1e-43177
NC_014831:8965:209172091721873957Thermaerobacter marianensis DSM 12885 chromosome, complete genomephage-type endonuclease2e-42173
NC_004557:1141558:1143708114370811450511344Clostridium tetani E88, complete genomehypothetical protein2e-40166
NC_006322:1415863:143031814303181431256939Bacillus licheniformis ATCC 14580, complete genomeYqaJ2e-35149
NC_020207:1170000:117007411700741171015942Enterococcus faecium NRRL B-2354, complete genomehypothetical protein1e-33144
NC_015437:1494777:151102615110261511961936Selenomonas sputigena ATCC 35185 chromosome, complete genomephage-type endonuclease1e-32140
NC_016935:1636278:164999116499911650863873Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein7e-32137
NC_016935:6464201:648593264859326486804873Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein2e-31136
NC_012491:3736167:375674137567413757610870Brevibacillus brevis NBRC 100599, complete genomehypothetical protein2e-30133
NC_016077:1278104:129056412905641291553990Acidaminococcus intestini RyC-MR95 chromosome, complete genomehypothetical protein2e-29130
NC_009524:1627414:1641944164194416429601017Psychrobacter sp. PRwf-1 chromosome, complete genomephage-like protein endonuclease-like protein2e-28127
NC_015942:1711026:172566717256671726149483Acidithiobacillus ferrivorans SS3 chromosome, complete genome3e-28125
NC_014551:576000:581026581026581529504Bacillus amyloliquefaciens DSM 7, complete genomenuclease; skin element4e-25115
NC_006270:1415001:142959014295901430393804Bacillus licheniformis ATCC 14580, complete genomephage related protein2e-24113
NC_012590:2117027:215335821533582154356999Corynebacterium aurimucosum ATCC 700975, complete genomehypothetical protein6e-24111
NC_007712:1954808:197837719783771979273897Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-20100
NC_015379:908904:957674957674957892219Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein2e-2099.8
NC_012559:1301988:130679213067921307043252Laribacter hongkongensis HLHK9, complete genomePhage-related protein, predicted endonuclease4e-1685.5
NC_006087:2439252:245544024554402456435996Leifsonia xyli subsp. xyli str. CTCB07, complete genomephage recombination protein4e-1582.4
NC_016147:3349272:336147533614753361834360Pseudoxanthomonas spadix BD-a59 chromosome, complete genomehypothetical protein1e-1067.4
NC_011894:3671162:368873736887373689687951Methylobacterium nodulans ORS 2060, complete genomehypothetical protein9e-1064.7
NC_011894:7035285:705828170582817059228948Methylobacterium nodulans ORS 2060, complete genomephage-related protein endonuclease-like protein9e-0961.2
NC_010612:4837346:4857776485777648588551080Mycobacterium marinum M, complete genomehypothetical protein2e-0860.1
NC_016801:1123733:1143685114368511447101026Corynebacterium diphtheriae C7 (beta) chromosome, complete genomehypothetical protein1e-0551.2