Pre_GI: BLASTP Hits

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Query: NC_009439:1174432:1179846 Pseudomonas mendocina ymp, complete genome

Start: 1179846, End: 1180316, Length: 471

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013194:4034854:403871240387124039014303Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completecold-shock DNA-binding protein family9e-1992.4
NC_013173:2884887:289990228999022900072171Desulfomicrobium baculatum DSM 4028, complete genome9e-1785.9
NC_006513:1695487:170804017080401708609570Azoarcus sp. EbN1, complete genomeprobable cold shock family protein2e-1685.1
NC_016147:151224:167376167376167663288Pseudoxanthomonas spadix BD-a59 chromosome, complete genomecold-shock DNA-binding protein family9e-1682.8
NC_009092:521519:542808542808543425618Shewanella loihica PV-4, complete genomecold-shock DNA-binding domain protein2e-1477.8
NC_007948:3541987:355141135514113551992582Polaromonas sp. JS666, complete genomecold-shock DNA-binding domain protein3e-1477.4
NC_012108:2542328:255697125569712557495525Desulfobacterium autotrophicum HRM2, complete genomeputative cold shock domain family protein4e-1477
NC_017075:2293209:230344023034402303844405Rubrivivax gelatinosus IL144, complete genomehypothetical protein6e-1476.3
NC_004347:718091:748237748237748848612Shewanella oneidensis MR-1, complete genomecold shock domain family protein2e-1375.1
NC_010506:5195000:520433252043325204952621Shewanella woodyi ATCC 51908, complete genomecold-shock DNA-binding domain protein1e-1272.4
NC_004603:1897532:190226619022661902760495Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein2e-1271.6
NC_002937:1915787:192581719258171926353537Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completecold shock domain protein2e-1271.2
NC_004459:2443000:257510025751002575567468Vibrio vulnificus CMCP6 chromosome I, complete sequenceCold shock domain family protein1e-1168.9
NC_006138:225832:252701252701253288588Desulfotalea psychrophila LSv54, complete genomehypothetical protein5e-1166.6
NC_008751:1043269:108077710807771081310534Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeputative cold-shock DNA-binding domain protein3e-1063.9
NC_009085:893601:909395909395909742348Acinetobacter baumannii ATCC 17978, complete genomeExcalibur1e-0962.4
NC_011595:3015895:302083630208363021183348Acinetobacter baumannii AB307-0294, complete genomehypothetical protein1e-0962.4
NC_012559:854507:866611866611866865255Laribacter hongkongensis HLHK9, complete genomeProphage MuMc02, nuclease, putative2e-0651.6