Pre_GI: BLASTP Hits

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Query: NC_009439:1075170:1081518 Pseudomonas mendocina ymp, complete genome

Start: 1081518, End: 1085201, Length: 3684

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015740:926920:9323809323809348902511Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeTfp pilus assembly protein tip-associated adhesin PilY1-like protein01291
NC_008463:5364428:5373154537315453766303477Pseudomonas aeruginosa UCBPP-PA14, complete genometype 4 fimbrial biogenesis protein PilY10852
NC_018080:5192264:5202098520209852055743477Pseudomonas aeruginosa DK2 chromosome, complete genometype 4 fimbrial biogenesis protein PilY10850
NC_015410:1144272:1149634114963411529663333Pseudomonas mendocina NK-01 chromosome, complete genomeputative type IV fimbrial biogenesis protein PilY10830
NC_009434:1068281:1074033107403310774253393Pseudomonas stutzeri A1501, complete genometype 4 fimbrial biogenesis protein PilY10749
NC_011901:3363500:3372510337251033760553546Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completetype 4 fimbrial biogenesis protein PilY19e-106385
NC_015856:4203301:4212245421224542157543510Collimonas fungivorans Ter331 chromosome, complete genometype 4 fimbrial biogenesis protein PilY14e-105383
NC_014153:436082:4411674411674447033537Thiomonas intermedia K12 chromosome, complete genomeputative type 4 fimbrial biogenesis protein PilY15e-87323
NC_003919:3113343:3121739312173931250863348Xanthomonas axonopodis pv. citri str. 306, complete genomePilY1 protein3e-83311
NC_015563:1595500:1602634160263416061343501Delftia sp. Cs1-4 chromosome, complete genomeNeisseria PilC domain-containing protein1e-82308
NC_008781:3056407:3066903306690330703493447Polaromonas naphthalenivorans CJ2, complete genometype 4 fimbrial biogenesis protein PilY11e-79298
NC_008782:3361850:3370447337044733739113465Acidovorax sp. JS42, complete genometype 4 fimbrial biogenesis protein PilY11e-78295
NC_010002:5752363:5761165576116557647133549Delftia acidovorans SPH-1, complete genomeFG-GAP repeat protein2e-70268
NC_010682:701912:7121347121347155023369Ralstonia pickettii 12J chromosome 1, complete sequenceTfp pilus assembly protein tip-associated adhesin PilY1-like protein7e-69263
NC_013446:1173377:1179763117976311834283666Comamonas testosteroni CNB-2, complete genomeputative type-4 fimbrial biogenesis2e-68261
NC_010688:1908012:1920973192097319246743702Xanthomonas campestris pv. campestris, complete genomeputative Tfp pilus assembly protein3e-68261
NC_012856:737170:7486167486167519843369Ralstonia pickettii 12D chromosome 1, complete genomeTfp pilus assembly protein tip-associated adhesin PilY1-like protein7e-68259
NC_017271:2935643:2979052297905229827953744Xanthomonas campestris pv. raphani 756C chromosome, completePilY1 protein9e-67256
NC_016147:2471451:2475922247592224785792658Pseudoxanthomonas spadix BD-a59 chromosome, complete genomePilY1 protein2e-66254
NC_015556:4118304:4128157412815741319663810Pseudomonas fulva 12-X chromosome, complete genomeNeisseria PilC domain protein2e-64248
NC_007645:6049340:6058012605801260623284317Hahella chejuensis KCTC 2396, complete genomeTfp pilus assembly protein, tip-associated adhesin PilY11e-63246
NC_007508:3183631:3202185320218532059313747Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeTfp pilus adhesin2e-62241
NC_013889:216829:2168292168292203533525Thioalkalivibrio sp. K90mix chromosome, complete genomeNeisseria PilC domain protein4e-60234
NC_007298:3271071:3278079327807932827134635Dechloromonas aromatica RCB, complete genomeputative Tfp pilus assembly protein tip-associated adhesin PilY11e-59233
NC_002488:1157684:1173720117372011773733654Xylella fastidiosa 9a5c, complete genomePilY1 gene product2e-59231
NC_014931:6415940:6420388642038864241283741Variovorax paradoxus EPS chromosome, complete genomeTfp pilus assembly protein tip-associated adhesin PilY1-like protein1e-58229
NC_014311:2733897:2743422274342227473813960Ralstonia solanacearum PSI07 chromosome, complete genometype IV pilus assembly protein, tip-associated adhesin PilY1e-56223
NC_007086:1936505:1948172194817219519003729Xanthomonas campestris pv. campestris str. 8004, complete genomePilY1 protein2e-53211
NC_018012:2327376:2337138233713823414604323Thiocystis violascens DSM 198 chromosome, complete genomeTfp pilus assembly protein, tip-associated adhesin PilY14e-53211
NC_010995:3821327:3830476383047638349244449Cellvibrio japonicus Ueda107, complete genomeputative fimbrial protein2e-52208
NC_007705:3429493:3437032343703234410153984Xanthomonas oryzae pv. oryzae MAFF 311018, complete genomePilY1 protein3e-52208
NC_010717:3564955:3572397357239735763803984Xanthomonas oryzae pv. oryzae PXO99A, complete genomePilY13e-52208
NC_006834:3422985:3430525343052534340493525Xanthomonas oryzae pv. oryzae KACC10331, complete genomePilY13e-52207
NC_017267:2955946:2964382296438229673692988Xanthomonas oryzae pv. oryzicola BLS256 chromosome, completeprotein PilY13e-51204
NC_012791:5496175:5500067550006755037233657Variovorax paradoxus S110 chromosome 1, complete genomeTfp pilus assembly protein tip-associated adhesin PilY1-like protein3e-46188
NC_008786:557314:5663105663105713405031Verminephrobacter eiseniae EF01-2, complete genomeTfp pilus assembly protein tip-associated adhesin PilY1-like protein2e-44181
NC_014924:936158:9449289449289491274200Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeputative Tfp pilus assembly protein4e-43177
NC_015138:3927411:3932224393222439367264503Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeTfp pilus assembly protein tip-associated adhesin PilY1-like protein1e-40169
NC_010002:5752363:5755186575518657575822397Delftia acidovorans SPH-1, complete genomeFG-GAP repeat protein2e-40169
NC_008786:4216152:4221789422178942267654977Verminephrobacter eiseniae EF01-2, complete genomeTfp pilus assembly protein tip-associated adhesin PilY1-like protein1e-39166
NC_008752:3902637:3921603392160339261054503Acidovorax avenae subsp. citrulli AAC00-1, complete genomeTfp pilus assembly protein tip-associated adhesin PilY1-like protein4e-38160
NC_015563:1595500:1609857160985716122532397Delftia sp. Cs1-4 chromosome, complete genomeFG-GAP repeat protein7e-38160
NC_003902:2933121:2958319295831929598691551Xanthomonas campestris pv. campestris str. ATCC 33913, completePilY1 protein1e-31139
NC_012440:1080675:1104545110454511083153771Persephonella marina EX-H1, complete genomehypothetical protein1e-1793.2
NC_015380:196554:2023322023322068944563Candidatus Pelagibacter sp. IMCC9063 chromosome, complete genometype IV fimbrial biogenesis protein PilY16e-1687.4
NC_011979:3341099:3359664335966433655495886Geobacter sp. FRC-32, complete genomehypothetical protein7e-1687
NC_013173:3854368:3863786386378638676523867Desulfomicrobium baculatum DSM 4028, complete genomeTfp pilus assembly protein tip-associated adhesin PilY1-like protein2e-1586.3
NC_014311:2733897:2750396275039627522371842Ralstonia solanacearum PSI07 chromosome, complete genometype IV pilus assembly protein, tip-associated adhesin PilY4e-1584.7
NC_008700:1115436:1123322112332211269273606Shewanella amazonensis SB2B, complete genometype IV pilin biogenesis protein, putative1e-1483.6
NC_008321:3512471:3522891352289135264243534Shewanella sp. MR-4, complete genometype IV pilin biogenesis protein, putative1e-1483.2
NC_007205:60069:8034580345849164572Candidatus Pelagibacter ubique HTCC1062, complete genomeType II Secretion PilY14e-1481.6
NC_014926:1108811:1125154112515411288313678Thermovibrio ammonificans HB-1 chromosome, complete genomehypothetical protein5e-1481.3
NC_008322:3585601:3593656359365635973063651Shewanella sp. MR-7, complete genometype IV pilin biogenesis protein, putative4e-1378.2
NC_013173:3854368:3871152387115238749973846Desulfomicrobium baculatum DSM 4028, complete genomeTfp pilus assembly protein tip-associated adhesin PilY1-like protein1e-1276.3
NC_004347:3670145:3678173367817336816793507Shewanella oneidensis MR-1, complete genometype IV pilin biogenesis protein, putative5e-1170.9
NC_008260:497855:5062525062525092813030Alcanivorax borkumensis SK2, complete genomepilin biogenesis related protein6e-1170.9
NC_013851:3392644:3404243340424334074223180Allochromatium vinosum DSM 180 chromosome, complete genomePyrrolo-quinoline quinone6e-1170.9
NC_007973:2888824:2917100291710029189141815Ralstonia metallidurans CH34 chromosome 1, complete sequenceputative type 4 fimbrial biogenesis PilY1-related protein transmembrane9e-1170.5
NC_009052:1211989:1221539122153912250453507Shewanella baltica OS155, complete genometype IV pilin biogenesis protein, putative4e-1068.2
NC_011663:3818886:3828251382825138317573507Shewanella baltica OS223 chromosome, complete genometype IV pilin biogenesis protein5e-1067.8
NC_009665:1332751:1340673134067313441823510Shewanella baltica OS185 chromosome, complete genometype IV pilin biogenesis protein7e-1067.4
NC_008740:979830:9882229882229913923171Marinobacter aquaeolei VT8, complete genomeTfp pilus assembly protein tip-associated adhesin PilY1-like7e-1067.4
NC_009997:1368471:1376396137639613799023507Shewanella baltica OS195, complete genometype IV pilin biogenesis protein, putative7e-1067.4
NC_016901:1367443:1376993137699313804993507Shewanella baltica OS678 chromosome, complete genometype IV pilin biogenesis protein, putative7e-1067.4
NC_010162:2717741:2735800273580027378992100Sorangium cellulosum 'So ce 56', complete genomeputative pilin biogenesis protein1e-0966.2
NC_008577:3738758:3753033375303337565393507Shewanella sp. ANA-3 chromosome 1, complete sequencetype IV pilin biogenesis protein, putative1e-0966.2
NC_009092:1263964:1273979127397912775273549Shewanella loihica PV-4, complete genometype IV pilin biogenesis protein, putative2e-0862.8
NC_009901:1309724:1317754131775413213383585Shewanella pealeana ATCC 700345, complete genometype IV pilin biogenesis protein, putative2e-0862.4
NC_015424:3890293:3898293389829339019373645Aeromonas veronii B565 chromosome, complete genomeTapY14e-0758.2
NC_020829:4246847:4252381425238142554283048Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein6e-0654.3