Pre_GI: BLASTP Hits

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Query: NC_009439:1075170:1081090 Pseudomonas mendocina ymp, complete genome

Start: 1081090, End: 1081515, Length: 426

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015740:926920:931932931932932357426Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeTfp pilus assembly protein PilE-like protein4e-42169
NC_018080:5192264:520590052059005206325426Pseudomonas aeruginosa DK2 chromosome, complete genometype 4 fimbrial biogenesis protein PilE1e-39161
NC_008463:5364428:537695653769565377381426Pseudomonas aeruginosa UCBPP-PA14, complete genometype 4 fimbrial biogenesis protein PilE1e-39161
NC_009434:1068281:107330110733011073708408Pseudomonas stutzeri A1501, complete genometype 4 fimbrial biogenesis protein PilE3e-23107
NC_015410:1144272:114917611491761149637462Pseudomonas mendocina NK-01 chromosome, complete genomeTfp pilus assembly protein PilE-like protein5e-23106
NC_008577:3738758:375262637526263753024399Shewanella sp. ANA-3 chromosome 1, complete sequencemethylation site containing protein3e-1787
NC_015556:4118304:413193541319354132417483Pseudomonas fulva 12-X chromosome, complete genometype IV pilin6e-1786.3
NC_014931:6415940:642444364244436424994552Variovorax paradoxus EPS chromosome, complete genomefimbrial protein pilin8e-1579
NC_008322:3585601:359324635932463593647402Shewanella sp. MR-7, complete genomemethylation site containing protein2e-1478.2
NC_008321:3512471:352243935224393522882444Shewanella sp. MR-4, complete genomemethylation site containing protein4e-1476.6
NC_012791:5496175:550404555040455504554510Variovorax paradoxus S110 chromosome 1, complete genomefimbrial protein pilin3e-1373.9
NC_009901:1309724:132134713213471321739393Shewanella pealeana ATCC 700345, complete genomemethylation site containing protein5e-1269.7
NC_013446:1173377:117929211792921179732441Comamonas testosteroni CNB-2, complete genomefimbrial protein pilin6e-1269.3
NC_015424:3890293:390396839039683904372405Aeromonas veronii B565 chromosome, complete genomeTppA7e-1269.3
NC_006834:3422985:343006334300633430518456Xanthomonas oryzae pv. oryzae KACC10331, complete genometype IV pilin1e-1168.9
NC_017267:2955946:296392029639202964375456Xanthomonas oryzae pv. oryzicola BLS256 chromosome, completetype IV pilin1e-1168.9
NC_009092:1263964:127753112775311277923393Shewanella loihica PV-4, complete genomemethylation site containing protein9e-1268.9
NC_010002:5752363:576471057647105765156447Delftia acidovorans SPH-1, complete genomefimbrial protein pilin8e-1268.9
NC_015563:1595500:160220016022001602613414Delftia sp. Cs1-4 chromosome, complete genomefimbrial protein pilin2e-1167.8
NC_008700:1115436:112694511269451127343399Shewanella amazonensis SB2B, complete genometype IV pilus biogenesis protein PilE3e-1167.4
NC_012856:737170:752352752352752786435Ralstonia pickettii 12D chromosome 1, complete genometype IV pilin4e-1167
NC_010682:701912:715869715869716303435Ralstonia pickettii 12J chromosome 1, complete sequencetype IV pilin5e-1166.6
NC_009052:1211989:122505712250571225449393Shewanella baltica OS155, complete genometype IV pilus biogenesis protein PilE8e-1165.9
NC_011663:3818886:382784738278473828239393Shewanella baltica OS223 chromosome, complete genometype IV pilus biogenesis protein PilE8e-1165.9
NC_016901:1367443:138051113805111380903393Shewanella baltica OS678 chromosome, complete genometype IV pilus biogenesis protein PilE2e-1064.3
NC_009665:1332751:134419413441941344586393Shewanella baltica OS185 chromosome, complete genometype IV pilus biogenesis protein PilE2e-1064.3
NC_009997:1368471:137991413799141380306393Shewanella baltica OS195, complete genometype IV pilus biogenesis protein PilE2e-1064.3
NC_007705:3429493:343657034365703436950381Xanthomonas oryzae pv. oryzae MAFF 311018, complete genometype IV pilin6e-1063.2
NC_010717:3564955:357193535719353572303369Xanthomonas oryzae pv. oryzae PXO99A, complete genometype IV pilin5e-1063.2
NC_015856:4203301:421178042117804212208429Collimonas fungivorans Ter331 chromosome, complete genometype IV pilus biogenesis protein PilE8e-1062.4
NC_004347:3670145:367777036777703678162393Shewanella oneidensis MR-1, complete genometype IV pilus biogenesis protein PilE9e-1062.4
NC_014924:936158:949117949117949545429Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeputative type IV pilin pile protein3e-0960.8
NC_014311:2733897:274739527473952747880486Ralstonia solanacearum PSI07 chromosome, complete genometype IV pilus assembly protein PilE4e-0960.1
NC_007508:3183631:320174532017453202152408Xanthomonas campestris pv. vesicatoria str. 85-10, complete genometype IV pilin PilE6e-0959.7
NC_008782:3361850:337399733739973374485489Acidovorax sp. JS42, complete genomefimbrial protein pilin1e-0858.9
NC_003919:3113343:312130531213053121736432Xanthomonas axonopodis pv. citri str. 306, complete genomePilE protein1e-0755.1
NC_018012:2327376:234146423414642341865402Thiocystis violascens DSM 198 chromosome, complete genomeprepilin-type N-terminal cleavage/methylation domain-containing protein1e-0755.1
NC_013851:3392644:340745134074513407879429Allochromatium vinosum DSM 180 chromosome, complete genometype 4 fimbrial biogenesis protein PilE2e-0754.3
NC_013889:216829:228243228243228665423Thioalkalivibrio sp. K90mix chromosome, complete genomepilus assembly protein2e-0754.3
NC_016147:2471451:247549124754912475901411Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeputative prepilin like protein3e-0754.3
NC_011901:3363500:337174633717463372171426Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completetype IV pilin3e-0753.9
NC_020829:4246847:425765142576514258043393Pseudomonas denitrificans ATCC 13867, complete genomemethylation protein5e-0753.1
NC_008740:979830:991389991389991847459Marinobacter aquaeolei VT8, complete genomegeneral secretion pathway protein H8e-0752.4
NC_007086:1936505:195197519519751952343369Xanthomonas campestris pv. campestris str. 8004, complete genometype IV pilin4e-0650.1
NC_003902:2933121:295787629578762958244369Xanthomonas campestris pv. campestris str. ATCC 33913, completetype IV pilin4e-0650.1