Pre_GI: BLASTP Hits

Some Help

Query: NC_009439:101174:123150 Pseudomonas mendocina ymp, complete genome

Start: 123150, End: 124178, Length: 1029

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015379:6714545:6731716673171667327471032Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative acetylpolyamine aminohydrolase5e-165580
NC_015379:3570658:3583095358309535841291035Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative acetylpolyamine aminohydrolase7e-105380
NC_014532:1191267:1212351121235112133911041Halomonas elongata DSM 2581, complete genomehistone deacetylase superfamily1e-101370
NC_002678:5714000:5727449572744957284891041Mesorhizobium loti MAFF303099, complete genomeacetylpolyamine aminohydrolase2e-89328
NC_013173:1231213:1251678125167812534261749Desulfomicrobium baculatum DSM 4028, complete genomehistone deacetylase superfamily2e-62239
NC_009256:1282793:1311687131168713127091023Burkholderia vietnamiensis G4 chromosome 1, complete sequencehistone deacetylase superfamily protein2e-59229
NC_012785:20454:295752957530540966Kosmotoga olearia TBF 19.5.1, complete genomeHistone deacetylase2e-55216
NC_020304:129321:1313201313201335782259Desulfocapsa sulfexigens DSM 10523, complete genomedeacetylase, histone deacetylase/acetoin utilization protein1e-52207
NC_019962:3331849:3349060334906033500941035Natrinema pellirubrum DSM 15624, complete genomedeacetylase, histone deacetylase/acetoin utilization protein1e-35150
NC_019964:2816990:2816990281699028180031014Halovivax ruber XH-70, complete genomedeacetylase, histone deacetylase/acetoin utilization protein3e-34145
NC_006396:2025500:2048019204801920490261008Haloarcula marismortui ATCC 43049 chromosome I, complete sequenceacetoin utilization protein2e-31137
NC_007796:817404:826338826338827306969Methanospirillum hungatei JF-1, complete genomehistone deacetylase superfamily4e-31135
NC_014299:218252:2320602320602331511092Halalkalicoccus jeotgali B3 plasmid 2, complete sequencehistone deacetylase superfamily protein3e-28126
NC_014657:914071:9348619348619361771317Caldicellulosiruptor owensensis OL chromosome, complete genomehistone deacetylase superfamily1e-27124
NC_010338:588000:6052396052396063781140Caulobacter sp. K31, complete genomehistone deacetylase superfamily2e-27123
NC_015587:558180:5660415660415671801140Hydrogenobaculum sp. SHO chromosome, complete genomeHistone deacetylase2e-27123
NC_015557:558127:5659885659885671271140Hydrogenobaculum sp. 3684 chromosome, complete genomeHistone deacetylase2e-27123
NC_020411:558153:5660145660145671531140Hydrogenobaculum sp. HO, complete genomeHistone deacetylase2e-27123
NC_011126:555483:5771185771185782571140Hydrogenobaculum sp. Y04AAS1, complete genomehistone deacetylase superfamily2e-27123
NC_008463:1293079:1293079129307912942211143Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative deacetylase3e-27122
NC_011768:3854455:3854455385445538557681314Desulfatibacillum alkenivorans AK-01, complete genomehistone deacetylase superfamily4e-26119
NC_007510:2284000:2288854228885422899631110Burkholderia sp. 383 chromosome 1, complete sequenceHistone deacetylase superfamily3e-26119
NC_015388:2499187:250392925039292504879951Desulfobacca acetoxidans DSM 11109 chromosome, complete genomehistone deacetylase superfamily8e-26117
NC_018691:359695:3657843657843668931110Alcanivorax dieselolei B5 chromosome, complete genomeHistone deacetylase superfamily9e-26117
NC_006138:2683545:2696232269623226972571026Desulfotalea psychrophila LSv54, complete genomehypothetical protein1e-25117
NC_019673:3726519:3732221373222137338671647Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-25117
NC_013385:1007616:1025036102503610263881353Ammonifex degensii KC4, complete genomeHistone deacetylase1e-24114
NC_010475:2896000:291428129142812915198918Synechococcus sp. PCC 7002, complete genomeacetylpolyamine aminohydrolase1e-24114
NC_013440:5543667:5557259555725955583381080Haliangium ochraceum DSM 14365, complete genomeHistone deacetylase1e-24114
NC_020304:1222000:1223266122326612243301065Desulfocapsa sulfexigens DSM 10523, complete genomedeacetylase, histone deacetylase/acetoin utilization protein3e-24112
NC_000918:707801:7088327088327099591128Aquifex aeolicus VF5, complete genomeacetoin utilization protein5e-24112
NC_007760:3948730:395238439523843953358975Anaeromyxobacter dehalogenans 2CP-C, complete genomeHistone deacetylase superfamily8e-24111
NC_010511:1074557:111043111104311111411981Methylobacterium sp. 4-46 chromosome, complete genomehistone deacetylase superfamily protein2e-23110
NC_006569:69939:9665796657976911035Silicibacter pomeroyi DSS-3 megaplasmid, complete sequencehistone deacetylase/AcuC/AphA family protein3e-23109
NC_012988:347500:3594083594083604331026Methylobacterium extorquens DM4, complete genomehistone deacetylase3e-23109
NC_003911:253400:270724270724271650927Silicibacter pomeroyi DSS-3, complete genomehistone deacetylase family protein4e-23108
NC_017059:1727095:174218717421871743116930Rhodospirillum photometricum DSM 122, complete genomeHistone deacetylase superfamily2e-22107
NC_008344:1899317:192141019214101922330921Nitrosomonas eutropha C91, complete genomehistone deacetylase superfamily1e-22107
NC_015185:485866:512685512685513590906Desulfurobacterium thermolithotrophum DSM 11699 chromosome,histone deacetylase superfamily1e-22107
NC_012808:3897751:391563939156393916493855Methylobacterium extorquens AM1, complete genomeHistone deacetylase family protein1e-22107
NC_015966:1040562:1040562104056210415931032Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomehistone deacetylase superfamily2e-22106
NC_020411:765500:793168793168794097930Hydrogenobaculum sp. HO, complete genomehistone deacetylase superfamily4e-22105
NC_015587:765500:793196793196794125930Hydrogenobaculum sp. SHO chromosome, complete genomehistone deacetylase superfamily4e-22105
NC_015557:765500:793141793141794070930Hydrogenobaculum sp. 3684 chromosome, complete genomehistone deacetylase superfamily4e-22105
NC_009925:5479613:548571454857145486640927Acaryochloris marina MBIC11017, complete genomehistone deacetylase family protein2e-21103
NC_009483:2640403:2658863265886326600201158Geobacter uraniireducens Rf4 chromosome, complete genomehistone deacetylase superfamily protein2e-21103
NC_011126:779500:806626806626807555930Hydrogenobaculum sp. Y04AAS1, complete genomehistone deacetylase superfamily5e-21102
NC_015723:1486000:151886415188641519808945Cupriavidus necator N-1 chromosome 2, complete sequencehistone deacetylase superfamily protein6e-21102
NC_000854:50407:6537165371664711101Aeropyrum pernix K1, complete genomehypothetical protein8e-21101
NC_013889:1439326:145245014524501453373924Thioalkalivibrio sp. K90mix chromosome, complete genomeHistone deacetylase3e-2099.8
NC_017515:1653306:1655765165576516568741110Neisseria meningitidis M04-240196 chromosome, complete genomehypothetical protein1e-1997.4
NC_007298:2689731:271313327131332714098966Dechloromonas aromatica RCB, complete genomeHistone deacetylase superfamily2e-1997.1
NC_016051:1849905:1871525187152518725291005Thermococcus sp. AM4 chromosome, complete genomehistone deacetylase9e-1994.7
NC_015518:1518047:1534527153452715355461020Acidianus hospitalis W1 chromosome, complete genomehistone deacetylase superfamily protein9e-1994.7
NC_008340:362000:379529379529380452924Alkalilimnicola ehrlichei MLHE-1, complete genomehistone deacetylase superfamily1e-1894
NC_012622:1010210:1030599103059910316361038Sulfolobus islandicus Y.G.57.14 chromosome, complete genomehistone deacetylase superfamily protein2e-1893.6
NC_009455:273519:3179703179703189951026Dehalococcoides sp. BAV1 chromosome, complete genomehistone deacetylase superfamily protein3e-1893.2
NC_000909:467607:4703264703264713571032Methanocaldococcus jannaschii DSM 2661, complete genomeacetylpolyamine aminohydrolase (aphA)6e-1892
NC_007520:1940120:1955929195592919570681140Thiomicrospira crunogena XCL-2, complete genomeHistone deacetylase superfamily2e-1790.1
NC_009380:1663545:1663545166354516647261182Salinispora tropica CNB-440 chromosome, complete genomehistone deacetylase superfamily protein5e-1789
NC_015680:369777:3840903840903850971008Pyrococcus yayanosii CH1 chromosome, complete genomehistone deacetylase5e-1788.6
NC_003106:1879441:189311118931111894109999Sulfolobus tokodaii str. 7, complete genomehypothetical acetoin utilization acuC protein8e-1684.7
NC_013411:681907:6948196948196959881170Geobacillus sp. Y412MC61, complete genomeHistone deacetylase2e-1583.2
NC_014915:2900209:2906569290656929077381170Geobacillus sp. Y412MC52 chromosome, complete genomeHistone deacetylase2e-1583.2
NC_010337:2339056:2354840235484023560121173Heliobacterium modesticaldum Ice1, complete genomeacetoin utilization protein, subunit c3e-1582.8
NC_015435:607345:6073456073456083731029Metallosphaera cuprina Ar-4 chromosome, complete genomehistone deacetylase superfamily protein4e-1582.4
NC_009328:2808897:2830063283006328312321170Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeacetoin utilization protein AcuC4e-1582.4
NC_007181:163640:1753931753931764331041Sulfolobus acidocaldarius DSM 639, complete genomehistone deacetylase8e-1581.3
UCMB5137:2418403:2439887243988724410561170Bacillus atrophaeus UCMB-5137protein deacetylase2e-1480.5
NC_014639:2452286:2473919247391924750881170Bacillus atrophaeus 1942 chromosome, complete genomeprotein deacetylase3e-1479.7
CP002207:2452286:2473919247391924750881170Bacillus atrophaeus 1942, complete genomeprotein deacetylase3e-1479.7
NC_018750:3481476:3487735348773534888891155Streptomyces venezuelae ATCC 10712, complete genomeNAD-independent protein deacetylase AcuC1e-1377.4
NC_015416:2692536:271254527125452713330786Methanosaeta concilii GP-6 chromosome, complete genomehistone deacetylase family protein1e-1377.4
NC_008554:484267:486487486487487233747Syntrophobacter fumaroxidans MPOB, complete genomehistone deacetylase superfamily1e-1274.3
NC_014221:3137952:3136753313675331379551203Truepera radiovictrix DSM 17093 chromosome, complete genomeHistone deacetylase5e-1272.4
NC_017353:1235095:1254394125439412555511158Staphylococcus lugdunensis N920143, complete genomehistone deacetylase family protein6e-1272
NC_009484:775828:7807527807527818251074Acidiphilium cryptum JF-5 chromosome, complete genomehistone deacetylase superfamily protein2e-1067
NC_005070:837567:840554840554841525972Synechococcus sp. WH 8102, complete genomePutative histone deacetylase/AcuC/AphA family protein1e-0964.7
NC_008577:3125675:314309731430973143999903Shewanella sp. ANA-3 chromosome 1, complete sequencehistone deacetylase superfamily7e-0962
NC_008321:2922000:294257429425742943476903Shewanella sp. MR-4, complete genomehistone deacetylase superfamily2e-0860.5
NC_008322:2983951:300325730032573004159903Shewanella sp. MR-7, complete genomehistone deacetylase superfamily2e-0860.1
NC_007513:1388641:141790814179081418825918Synechococcus sp. CC9902, complete genomeputative histone deacetylase/AcuC/AphA family protein8e-0858.2
NC_007645:6647500:667606266760626676982921Hahella chejuensis KCTC 2396, complete genomeDeacetylases, including yeast histone deacetylase and acetoin utilization protein2e-0756.6
NC_020908:823589:826925826925827830906Octadecabacter arcticus 238, complete genomeputative deacetylase8e-0755.1
NC_018644:516157:529571529571530467897Alpha proteobacterium HIMB59 chromosome, complete genomehistone deacetylase family protein2e-0653.9
NC_007604:1442500:144250414425041443418915Synechococcus elongatus PCC 7942, complete genomehistone deacetylase/AcuC/AphA family protein-like4e-0652.4
NC_006576:161112:177381177381178295915Synechococcus elongatus PCC 6301, complete genomesimilar to histone deacetylase/AcuC/AphA family protein5e-0652.4