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Query: NC_009438:236424:254905 Shewanella putrefaciens CN-32 chromosome, complete genome

Start: 254905, End: 255900, Length: 996

Host Lineage: Shewanella putrefaciens; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella putrefaciens is a Gram-negative bacterium. It has been isolated from marine environments, as well as from anaerobic sandstone in the Morrison formation in New Mexico, USA. S. putrefaciens is also a facultative anaerobe with the ability to reduce iron and manganese metabolically; that is, it can use iron and manganese as the terminal electron acceptor in the electron transport chain (in contrast to obligate aerobes which must use oxygen for this purpose). It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamines (hence the species name putrefaciens, from putrid). This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This species, along with Shewanella algae, are the only Shewanella spp. to be found in clinical speciments. Normally found in marine environments in warmer temperatures, infections seem to occur more frequently in countries with a warm climate and in other countries during warm summer months.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014841:248487:2552092552092562461038Pantoea sp. At-9b plasmid pPAT9B04, complete sequenceintegrase family protein4e-30132
NC_014840:76232:8526485264862921029Pantoea sp. At-9b plasmid pPAT9B03, complete sequenceintegrase family protein2e-29129
NC_010510:388885:3984003984003994611062Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeintegrase family protein1e-28127
NC_014563:19307:3038830388314161029Pantoea vagans C9-1 plasmid pPag2, complete sequenceXerD-like integrase/recombinase2e-28126
NC_016817:185000:1914351914351924721038Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequenceCre recombinase4e-28125
NC_011887:110618:1319371319371329981062Methylobacterium nodulans ORS 2060 plasmid pMNOD02, completeintegrase family protein3e-28125
NC_011758:247666:2655772655772666381062Methylobacterium chloromethanicum CM4 plasmid pMCHL01, completeintegrase family protein5e-27122
NC_013956:4490000:449623744962374497139903Pantoea ananatis LMG 20103 chromosome, complete genomeCre2e-25116
NC_013206:21288:386753867539646972Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446integrase family protein3e-1686.3
NC_016628:193000:215655215655216623969Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceDNA integration/recombination/inversion protein1e-1480.5
NC_007722:2172000:2192258219225821934601203Erythrobacter litoralis HTCC2594, complete genomeIntegrase-like protein4e-1375.9
NC_017033:1939507:1949341194934119506571317Frateuria aurantia DSM 6220 chromosome, complete genomephage integrase family protein6e-1375.1
NC_012988:3288253:330339033033903304355966Methylobacterium extorquens DM4, complete genomeintegrase2e-1170.1
NC_011894:983572:995769995769996758990Methylobacterium nodulans ORS 2060, complete genomeintegrase family protein2e-0963.5
NC_013958:29548:341623416235157996Nitrosococcus halophilus Nc4 plasmid pNHAL01, complete sequenceintegrase domain protein SAM domain protein4e-0859.3
NC_008269:577111:5820615820615832601200Rhodococcus sp. RHA1 plasmid pRHL1, complete sequenceprobable integrase4e-0858.9
NC_007677:771168:8244758244758265382064Salinibacter ruber DSM 13855, complete genomePhage integrase, N-terminal SAM-like domain protein1e-0757.4
NC_008573:195317:2039462039462049681023Shewanella sp. ANA-3 plasmid 1, complete sequencephage integrase family protein6e-0755.5
NC_010501:2511887:253435325343532535288936Pseudomonas putida W619, complete genomeintegrase family protein8e-0754.7
NC_013166:1341575:135602813560281356969942Kangiella koreensis DSM 16069, complete genomeintegrase family protein3e-0652.8
NC_014032:825793:9156479156479177042058Salinibacter ruber M8 chromosome, complete genometyrosine recombinase XerD6e-0652