Some Help

Query: NC_009438:2058566:2076008 Shewanella putrefaciens CN-32 chromosome, complete genome

Start: 2076008, End: 2076559, Length: 552

Host Lineage: Shewanella putrefaciens; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella putrefaciens is a Gram-negative bacterium. It has been isolated from marine environments, as well as from anaerobic sandstone in the Morrison formation in New Mexico, USA. S. putrefaciens is also a facultative anaerobe with the ability to reduce iron and manganese metabolically; that is, it can use iron and manganese as the terminal electron acceptor in the electron transport chain (in contrast to obligate aerobes which must use oxygen for this purpose). It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamines (hence the species name putrefaciens, from putrid). This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This species, along with Shewanella algae, are the only Shewanella spp. to be found in clinical speciments. Normally found in marine environments in warmer temperatures, infections seem to occur more frequently in countries with a warm climate and in other countries during warm summer months.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:4006085:401950240195024020056555Pectobacterium wasabiae WPP163, complete genomeCRISPR-associated protein, Csy4 family8e-30129
NC_014216:1787000:179208417920841792650567Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeCRISPR-associated protein, Csy4 family3e-29127
NC_014836:993448:997216997216997764549Desulfurispirillum indicum S5 chromosome, complete genomeCsy4 family CRISPR-associated protein2e-25115
NC_012796:4693500:472671347267134727276564Desulfovibrio magneticus RS-1, complete genomehypothetical protein1e-25115
NC_005810:2508671:253030625303062530860555Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein1e-25115
NC_008150:2173708:219219221921922192746555Yersinia pestis Antiqua, complete genomehypothetical protein1e-25115
NC_004088:1909880:191089519108951911449555Yersinia pestis KIM, complete genomehypothetical protein1e-25115
NC_003143:2741478:276038227603822760936555Yersinia pestis CO92, complete genomehypothetical protein1e-25115
NC_017168:2999514:300149730014973002051555Yersinia pestis A1122 chromosome, complete genomehypothetical protein1e-25115
NC_013889:2561381:257460725746072575167561Thioalkalivibrio sp. K90mix chromosome, complete genomeCRISPR-associated protein, Csy4 family7e-25113
NC_016818:1963875:197047319704731971027555Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeCRISPR-associated protein Cas6/Csy4, subtype I-F/YPEST7e-2096.7
NC_018145:683874:693646693646694227582Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completeCRISPR-associated protein, Csy4 family4e-1684.3
NC_015873:1933036:194406619440661944632567Megasphaera elsdenii DSM 20460, complete genomeCRISPR-associated protein2e-1168.9
NC_009446:174951:178247178247178855609Dichelobacter nodosus VCS1703A, complete genomehypothetical protein4e-0754.3
NC_015436:1322087:132208713220871322668582Spirochaeta coccoides DSM 17374 chromosome, complete genomeCRISPR-associated protein, Csy4 family5e-0753.9
NC_017098:477000:489796489796490377582Spirochaeta africana DSM 8902 chromosome, complete genomeCRISPR-associated protein Cas6/Csy4, subtype I-F/YPEST1e-0653.1