Pre_GI: BLASTN Hits

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Query: NC_009381:3596000 Yersinia pestis Pestoides F chromosome, complete genome

Start: 3596000, End: 3618103, Length: 22104

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Atypical strain isolated from the former Soviet Union, USSR. This strain lacks a plasminogen activator and is virulent by the aerosol route. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003143:483395*48339550335019956Yersinia pestis CO92, complete genome038190BLASTN svgBLASTP svg
NC_008150:4561633*4561633458159919967Yersinia pestis Antiqua, complete genome038180BLASTN svgBLASTP svg
NC_008149:402599*40259942390621308Yersinia pestis Nepal516, complete genome038180BLASTN svgBLASTP svg
NC_010159:80966380966383240722745Yersinia pestis Angola, complete genome038020BLASTN svgBLASTP svg
NC_004088:41166764116676413528618611Yersinia pestis KIM, complete genome036070BLASTN svgBLASTP svg
NC_010465:39587663958766397730818543Yersinia pseudotuberculosis YPIII, complete genome035600BLASTN svgBLASTP svg
NC_005810:42245004224500424264818149Yersinia pestis biovar Microtus str. 91001, complete genome035160BLASTN svgBLASTP svg
NC_006155:713174*71317473201318840Yersinia pseudotuberculosis IP 32953, complete genome031320BLASTN svgBLASTP svg
NC_009801:11921*119213399422074Escherichia coli E24377A, complete genome01534BLASTN svgBLASTP svg
CP002185:11921*119213722925309Escherichia coli W, complete genome01526BLASTN svgBLASTP svg
CP002516:4081484*4081484410409522612Escherichia coli KO11, complete genome01526BLASTN svgBLASTP svg
NC_011751:12000*120003835526356Escherichia coli UMN026 chromosome, complete genome01518BLASTN svgBLASTP svg
CU928160:11381*113813595024570Escherichia coli IAI1 chromosome, complete genome01518BLASTN svgBLASTP svg
AP010958:12660*126603398921330Escherichia coli O103:H2 str. 12009 DNA, complete genome01518BLASTN svgBLASTP svg
NC_011750:12047*120474221230166Escherichia coli IAI39 chromosome, complete genome01516BLASTN svgBLASTP svg
CU928145:11394*113943596224569Escherichia coli 55989 chromosome, complete genome01511BLASTN svgBLASTP svg
NC_010468:3970995*3970995399406323069Escherichia coli ATCC 8739, complete genome01511BLASTN svgBLASTP svg
NC_011748:11394*113943596224569Escherichia coli 55989, complete genome01511BLASTN svgBLASTP svg
NC_009800:12162*121623729725136Escherichia coli HS, complete genome01501BLASTN svgBLASTP svg
NC_002655:12000*120003357021571Escherichia coli O157:H7 EDL933, complete genome01479BLASTN svgBLASTP svg
NC_002695:12000*120003517323174Escherichia coli O157:H7 str. Sakai, complete genome01479BLASTN svgBLASTP svg
NC_012691:24762232476223251032334101Tolumonas auensis DSM 9187, complete genome1e-156561BLASTN svgBLASTP svg
NC_006370:768745*76874579247423730Photobacterium profundum SS9 chromosome 1, complete sequence4e-82313BLASTN svgBLASTP svg
NC_013416:820989*82098984592424936Aggregatibacter actinomycetemcomitans D11S-1, complete genome2e-59238BLASTN svgBLASTP svg
NC_003143:74116974116977078329615Yersinia pestis CO92, complete genome6e-41176BLASTN svgBLASTP svg
NC_004088:38591733859173388653627364Yersinia pestis KIM, complete genome6e-41176BLASTN svgBLASTP svg
NC_005810:33330003333000336198528986Yersinia pestis biovar Microtus str. 91001, complete genome6e-41176BLASTN svgBLASTP svg
NC_008149:65070665070667964628941Yersinia pestis Nepal516, complete genome6e-41176BLASTN svgBLASTP svg
NC_008150:34300003430000345505925060Yersinia pestis Antiqua, complete genome6e-41176BLASTN svgBLASTP svg
NC_010159:25969525969528600726313Yersinia pestis Angola, complete genome6e-41176BLASTN svgBLASTP svg
NC_010465:73391673391676156927654Yersinia pseudotuberculosis YPIII, complete genome6e-41176BLASTN svgBLASTP svg
NC_003197:25803258034831722515Salmonella typhimurium LT2, complete genome6e-35157BLASTN svgBLASTP svg
NC_003198:25807258074831322507Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-35157BLASTN svgBLASTP svg
NC_004631:25807258074831322507Salmonella enterica subsp. enterica serovar Typhi Ty2, complete6e-35157BLASTN svgBLASTP svg
NC_006511:25796257964828322488Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC6e-35157BLASTN svgBLASTP svg
NC_010102:25893258934815522263Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,6e-35157BLASTN svgBLASTP svg
NC_011080:25751257514830822558Salmonella enterica subsp. enterica serovar Newport str. SL254,6e-35157BLASTN svgBLASTP svg
NC_006841:75000075000077007720078Vibrio fischeri ES114 chromosome II, complete sequence2e-34155BLASTN svgBLASTP svg
NC_011149:25760257604831422555Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-32149BLASTN svgBLASTP svg
NC_010611:31976*319765159919624Acinetobacter baumannii ACICU, complete genome1e-32149BLASTN svgBLASTP svg
NC_011186:81982881982884300723180Vibrio fischeri MJ11 chromosome II, complete sequence1e-29139BLASTN svgBLASTP svg
NC_010634:32508103250810326864117832Yersinia pseudotuberculosis PB1/+, complete genome5e-29137BLASTN svgBLASTP svg
NC_003143:31912463191246321275521510Yersinia pestis CO92, complete genome5e-29137BLASTN svgBLASTP svg
NC_004088:15104671510467153309222626Yersinia pestis KIM, complete genome5e-29137BLASTN svgBLASTP svg
NC_005810:3021913*3021913304567123759Yersinia pestis biovar Microtus str. 91001, complete genome5e-29137BLASTN svgBLASTP svg
NC_006155:33333033333303335118117879Yersinia pseudotuberculosis IP 32953, complete genome5e-29137BLASTN svgBLASTP svg
NC_008149:14403711440371146301222642Yersinia pestis Nepal516, complete genome5e-29137BLASTN svgBLASTP svg
NC_008150:25747942574794259632821535Yersinia pestis Antiqua, complete genome5e-29137BLASTN svgBLASTP svg
NC_010159:409500*40950045168242183Yersinia pestis Angola, complete genome5e-29137BLASTN svgBLASTP svg
NC_010465:14271701427170145224325074Yersinia pseudotuberculosis YPIII, complete genome5e-29137BLASTN svgBLASTP svg
NC_012779:610509*61050963687526367Edwardsiella ictaluri 93-146, complete genome1e-26129BLASTN svgBLASTP svg
NC_014837:31265433126543315305826516Pantoea sp. At-9b chromosome, complete genome8e-25123BLASTN svgBLASTP svg
NC_015760:123929*12392914613122203Streptococcus salivarius CCHSS3, complete genome5e-20107BLASTN svgBLASTP svg
NC_007530:4117071*4117071413809921029Bacillus anthracis str. 'Ames Ancestor', complete genome2e-19105BLASTN svgBLASTP svg
NC_005957:4104880*4104880412588721008Bacillus thuringiensis serovar konkukian str. 97-27, complete2e-19105BLASTN svgBLASTP svg
NC_005945:4116978*4116978413524218265Bacillus anthracis str. Sterne, complete genome2e-19105BLASTN svgBLASTP svg
NC_003997:4116944*4116944413809921156Bacillus anthracis str. Ames, complete genome2e-19105BLASTN svgBLASTP svg
NC_003909:4064904*4064904408337118468Bacillus cereus ATCC 10987, complete genome3e-18101BLASTN svgBLASTP svg
NC_008600:4101748*4101748412497023223Bacillus thuringiensis str. Al Hakam, complete genome3e-18101BLASTN svgBLASTP svg
NC_012472:4119192*4119192414241423223Bacillus cereus 03BB102, complete genome3e-18101BLASTN svgBLASTP svg
NC_014335:4027105*4027105404657819474Bacillus cereus biovar anthracis str. CI chromosome, complete1e-1799.6BLASTN svgBLASTP svg
NC_006448:121435*12143514257121137Streptococcus thermophilus LMG 18311, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_006449:121462*12146214259721136Streptococcus thermophilus CNRZ1066, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_006274:4159096*4159096417709918004Bacillus cereus E33L, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_002528:148274*14827417635828085Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete3e-1591.7BLASTN svgBLASTP svg
NC_014909:121771*12177114449822728Candidatus Blochmannia vafer str. BVAF chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015673:106038*10603812809922062Corynebacterium resistens DSM 45100 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010184:4155345*4155345417709921755Bacillus weihenstephanensis KBAB4, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015633:2565753*2565753261159945847Vibrio anguillarum 775 chromosome chromosome I, complete sequence7e-1383.8BLASTN svgBLASTP svg
NC_008309:502983*50298352926826286Haemophilus somnus 129PT, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_009052:1394000*1394000141634622347Shewanella baltica OS155, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_005061:96536*9653614201245477Candidatus Blochmannia floridanus, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_004061:146862*14686216626919408Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008309:19055019055022259932050Haemophilus somnus 129PT, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_015744:769907*76990779249722591Chlamydia trachomatis L2c chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_011852:1482343*1482343150488322541Haemophilus parasuis SH0165, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010287:769600*76960079278823189Chlamydia trachomatis 434/Bu, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010280:769639*76963979282723189Chlamydia trachomatis L2b/UCH-1/proctitis, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015866:23344823344825473021283Rickettsia heilongjiangensis 054 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013714:24776382477638250276825131Bifidobacterium dentium Bd1, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007384:16500*165004120424705Shigella sonnei Ss046, complete genome3e-0661.9BLASTN svgBLASTP svg