Pre_GI: BLASTN Hits

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Query: NC_009381:3094939 Yersinia pestis Pestoides F chromosome, complete genome

Start: 3094939, End: 3130291, Length: 35353

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Atypical strain isolated from the former Soviet Union, USSR. This strain lacks a plasminogen activator and is virulent by the aerosol route. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008150:28784502878450291443935990Yersinia pestis Antiqua, complete genome023320BLASTN svgBLASTP svg
NC_015224:13910881391088142166930582Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,01473BLASTN svgBLASTP svg
NC_010159:30339893033989305747023482Yersinia pestis Angola, complete genome014560BLASTN svgBLASTP svg
NC_010634:11754041175404121321037807Yersinia pseudotuberculosis PB1/+, complete genome015980BLASTN svgBLASTP svg
NC_008149:11226931122693115815435462Yersinia pestis Nepal516, complete genome016010BLASTN svgBLASTP svg
NC_010465:34653513465351350059935249Yersinia pseudotuberculosis YPIII, complete genome016760BLASTN svgBLASTP svg
NC_006155:11913071191307123066739361Yersinia pseudotuberculosis IP 32953, complete genome023080BLASTN svgBLASTP svg
NC_010159:12880001288000132559537596Yersinia pestis Angola, complete genome023150BLASTN svgBLASTP svg
NC_005810:87267287267291210839437Yersinia pestis biovar Microtus str. 91001, complete genome023300BLASTN svgBLASTP svg
NC_004088:11968751196875123427537401Yersinia pestis KIM, complete genome023300BLASTN svgBLASTP svg
NC_003143:34467403446740346555618817Yersinia pestis CO92, complete genome023320BLASTN svgBLASTP svg
NC_003197:21529942152994218696633973Salmonella typhimurium LT2, complete genome8e-54220BLASTN svgBLASTP svg
NC_011083:22006132200613223455433942Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,8e-54220BLASTN svgBLASTP svg
NC_014012:16769831676983170572328741Shewanella violacea DSS12, complete genome5e-52214BLASTN svgBLASTP svg
NC_011149:21108612110861214483233972Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-51212BLASTN svgBLASTP svg
NC_010102:86186086186089518233323Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-51212BLASTN svgBLASTP svg
NC_006511:85478585478589509940315Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC4e-49204BLASTN svgBLASTP svg
NC_012917:15060831506083154696940887Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-48202BLASTN svgBLASTP svg
NC_003198:21097752109775214492235148Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-46196BLASTN svgBLASTP svg
NC_004631:86200286200289659934598Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-46196BLASTN svgBLASTP svg
NC_007912:26975812697581271653118951Saccharophagus degradans 2-40, complete genome3e-44188BLASTN svgBLASTP svg
NC_012982:18999731899973192773327761Hirschia baltica ATCC 49814, complete genome4e-43184BLASTN svgBLASTP svg
NC_012691:22250002225000224630921310Tolumonas auensis DSM 9187, complete genome3e-41178BLASTN svgBLASTP svg
NC_011080:21616962161696219837536680Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-39172BLASTN svgBLASTP svg
NC_012962:39337153933715398542551711Photorhabdus asymbiotica, complete genome2e-39172BLASTN svgBLASTP svg
NC_006138:23902239024710123200Desulfotalea psychrophila LSv54, complete genome2e-29139BLASTN svgBLASTP svg
NC_005139:34350034350037669433195Vibrio vulnificus YJ016 chromosome I, complete sequence2e-29139BLASTN svgBLASTP svg
NC_015633:41358741358744184328257Vibrio anguillarum 775 chromosome chromosome I, complete sequence2e-26129BLASTN svgBLASTP svg
NC_015224:17638481763848179825034403Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,1e-24123BLASTN svgBLASTP svg
NC_004547:16009001600900162975328854Erwinia carotovora subsp. atroseptica SCRI1043, complete genome8e-23117BLASTN svgBLASTP svg
NC_008570:3220539*3220539328055660018Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome8e-23117BLASTN svgBLASTP svg
NC_007761:781210*78121081014728938Rhizobium etli CFN 42, complete genome2e-20109BLASTN svgBLASTP svg
NC_014150:13731513731515888921575Brachyspira murdochii DSM 12563 chromosome, complete genome3e-19105BLASTN svgBLASTP svg
NC_014839:253961*25396131222658266Pantoea sp. At-9b plasmid pPAT9B02, complete sequence2e-1799.6BLASTN svgBLASTP svg
NC_014506:14824011482401150477822378Sulfurimonas autotrophica DSM 16294 chromosome, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_002505:23856923856927414635578Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete2e-1799.6BLASTN svgBLASTP svg
NC_004129:5846415*5846415588159935185Pseudomonas fluorescens Pf-5, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_019745:3217552*3217552324009922548Gloeocapsa sp. PCC 7428, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_000911:35226335226339172939467Synechocystis sp. PCC 6803, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_002655:28396002839600287010630507Escherichia coli O157:H7 EDL933, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_002695:27693872769387279989230506Escherichia coli O157:H7 str. Sakai, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_009832:17191491719149175798638838Serratia proteamaculans 568, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_011751:23958822395882242503029149Escherichia coli UMN026 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_014500:4257145*4257145428370126557Dickeya dadantii 3937 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_014758:12078941207894123842730534Calditerrivibrio nitroreducens DSM 19672 chromosome, complete1e-1283.8BLASTN svgBLASTP svg
NC_018604:12811312811315344025328Brachyspira pilosicoli WesB complete genome4e-1281.8BLASTN svgBLASTP svg
NC_009348:18932921893292191741424123Aeromonas salmonicida subsp. salmonicida A449, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_011060:51487451487456528450411Pelodictyon phaeoclathratiforme BU-1, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_011740:21351412135141215307917939Escherichia fergusonii ATCC 35469, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_018868:569423*56942361904449622Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_011138:10058721005872102609920228Alteromonas macleodii 'Deep ecotype', complete genome7e-1177.8BLASTN svgBLASTP svg
NC_020211:17045001704500175039445895Serratia marcescens WW4, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_008228:36799493679949370368623738Pseudoalteromonas atlantica T6c, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_014121:33996853399685343519435510Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete1e-0973.8BLASTN svgBLASTP svg
NC_008570:4594436*4594436463690342468Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_010067:80712980712983359926471Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete4e-0971.9BLASTN svgBLASTP svg
AC_000091:20966722096672212665729986Escherichia coli W3110 DNA, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_000913:20925592092559212109928541Escherichia coli K12, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_010473:21835672183567221209928533Escherichia coli str. K-12 substr. DH10B, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_011979:2352961*2352961238357030610Geobacter sp. FRC-32, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012914:46911746911750315934043Paenibacillus sp. JDR-2, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_015061:3840463*3840463391463974177Rahnella sp. Y9602 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_015410:22588002258800228509926300Pseudomonas mendocina NK-01 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_015566:16592881659288170119441907Serratia sp. AS12 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_015567:16604621660462170120640745Serratia sp. AS9 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_007946:22318722231872226061428743Escherichia coli UTI89, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_007613:86408486408489531131228Shigella boydii Sb227, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_007514:90456590456594230337739Chlorobium chlorochromatii CaD3, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_004431:23839012383901241472630826Escherichia coli CFT073, complete genome7e-0867.9BLASTN svgBLASTP svg
CU928160:21559472155947218736531419Escherichia coli IAI1 chromosome, complete genome7e-0867.9BLASTN svgBLASTP svg
CU928145:23244952324495235493330439Escherichia coli 55989 chromosome, complete genome7e-0867.9BLASTN svgBLASTP svg
CP002516:18464921846492187615129660Escherichia coli KO11, complete genome7e-0867.9BLASTN svgBLASTP svg
CP002185:22337322233732226508731356Escherichia coli W, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_008027:18470401847040187459927560Pseudomonas entomophila L48, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_008253:21341102134110216406229953Escherichia coli 536, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_016002:3704006*3704006373059326588Pseudogulbenkiania sp. NH8B, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_015733:41300004130000414900419005Pseudomonas putida S16 chromosome, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_011750:10349191034919106622831310Escherichia coli IAI39 chromosome, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_011748:23244952324495235493330439Escherichia coli 55989, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_011026:24503252450325248697436650Chloroherpeton thalassium ATCC 35110, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_009801:22761312276131230753131401Escherichia coli E24377A, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_008781:654289*65428967826423976Polaromonas naphthalenivorans CJ2, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_008563:21822702182270221156429295Escherichia coli APEC O1, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_004337:20987362098736212859929864Shigella flexneri 2a str. 301, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_004741:20816492081649211300631358Shigella flexneri 2a str. 2457T, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_008258:21006462100646213188931244Shigella flexneri 5 str. 8401, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_008639:2968000*2968000302586557866Chlorobium phaeobacteroides DSM 266, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_013716:22551022255102228502629925Citrobacter rodentium ICC168, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_014002:809678096712037639410Methanohalophilus mahii DSM 5219 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_020064:15475241547524158410636583Serratia marcescens FGI94, complete genome3e-0765.9BLASTN svgBLASTP svg
AP010958:25040722504072253559331522Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015581:771482*77148280463933158Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015733:1555476*1555476160259947124Pseudomonas putida S16 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_019904:52414445241444528632244879Echinicola vietnamensis DSM 17526 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_015968:29753512975351299850323153Enterobacter asburiae LF7a chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013282:28277572827757286060332847Cronobacter turicensis, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_008610:94498594498596460219618Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),4e-0661.9BLASTN svgBLASTP svg