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Query: NC_009381:627685:647294 Yersinia pestis Pestoides F chromosome, complete genome

Start: 647294, End: 647848, Length: 555

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Atypical strain isolated from the former Soviet Union, USSR. This strain lacks a plasminogen activator and is virulent by the aerosol route. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017265:854492:874102874102874656555Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative inner membrane protein9e-84308
NC_004088:3661601:366271036627103663264555Yersinia pestis KIM, complete genomeresistance protein9e-84308
NC_008149:3529428:353053735305373531091555Yersinia pestis Nepal516, complete genomemembrane protein9e-84308
NC_003143:1033500:103463210346321035186555Yersinia pestis CO92, complete genomehypothetical protein9e-84308
NC_010159:138879:139988139988140542555Yersinia pestis Angola, complete genomeputative YggT family membrane protein9e-84308
NC_008150:361224:382956382956383510555Yersinia pestis Antiqua, complete genomehypothetical protein9e-84308
NC_005810:3964468:398540139854013985955555Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein9e-84308
NC_014029:1001000:102067110206711021225555Yersinia pestis Z176003 chromosome, complete genomehypothetical protein9e-84308
NC_017154:941065:962816962816963370555Yersinia pestis D106004 chromosome, complete genomehypothetical protein9e-84308
NC_017160:945176:964791964791965345555Yersinia pestis D182038 chromosome, complete genomehypothetical protein9e-84308
NC_017168:50391:700887008870642555Yersinia pestis A1122 chromosome, complete genomehypothetical protein9e-84308
NC_010634:3692321:369343036934303693984555Yersinia pseudotuberculosis PB1/+, complete genomeprotein of unknown function YGGT2e-83307
NC_010465:933488:953200953200953754555Yersinia pseudotuberculosis YPIII, complete genomeprotein of unknown function YGGT3e-75280
NC_006155:3779381:378049037804903781044555Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein3e-75280
NC_020418:1397112:142693214269321427480549Morganella morganii subsp. morganii KT, complete genomeIntegral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock)8e-47186
NC_009092:1305355:131002413100241310572549Shewanella loihica PV-4, complete genomeprotein of unknown function YGGT5e-40163
NC_012913:2189862:221479922147992215359561Aggregatibacter aphrophilus NJ8700, complete genomeintegral membrane protein7e-37153
NC_008340:362000:383130383130383708579Alkalilimnicola ehrlichei MLHE-1, complete genomeprotein of unknown function YGGT4e-23107
NC_009074:2970435:297157629715762972217642Burkholderia pseudomallei 668 chromosome I, complete sequencemembrane protein, YGGT family1e-1892.4
NC_012724:829830:845285845285845848564Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein4e-1891.3
NC_010677:1784000:178595317859531786522570Francisella tularensis subsp. mediasiatica FSC147, complete genomeYggT family membrane protein8e-1890.1
NC_010645:3239420:325304732530473253589543Bordetella avium 197N, complete genomemembrane protein2e-1271.6
NC_004757:427483:446809446809447369561Nitrosomonas europaea ATCC 19718, complete genomeYGGT family7e-1063.5
NC_014220:837926:853477853477853752276Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeprotein of unknown function YGGT6e-0753.9
NC_014960:2059012:207611320761132076376264Anaerolinea thermophila UNI-1, complete genomehypothetical protein8e-0650.1