Pre_GI: BLASTP Hits

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Query: NC_009381:2939782:2961004 Yersinia pestis Pestoides F chromosome, complete genome

Start: 2961004, End: 2961189, Length: 186

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Atypical strain isolated from the former Soviet Union, USSR. This strain lacks a plasminogen activator and is virulent by the aerosol route. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005810:1130251:115147411514741151659186Yersinia pestis biovar Microtus str. 91001, complete genome6e-30129
NC_020418:116500:1488691488691501371269Morganella morganii subsp. morganii KT, complete genomeprophage integrase6e-2095.9
NC_020418:116500:1294051294051306791275Morganella morganii subsp. morganii KT, complete genomeprophage integrase3e-1994
NC_015733:715947:7195827195827208771296Pseudomonas putida S16 chromosome, complete genomephage integrase family protein3e-1994
NC_009381:3680638:3701106370110637023651260Yersinia pestis Pestoides F chromosome, complete genomeintegrase1e-1892
NC_004547:3207776:3226143322614332273961254Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeintegrase2e-1891.3
CP002185:4750571:4754674475467447559421269Escherichia coli W, complete genome3e-1890.5
NC_009436:3117661:3125655312565531269051251Enterobacter sp. 638, complete genomephage integrase family protein4e-1889.7
NC_013961:441719:4457984457984470751278Erwinia amylovora, complete genomeIntegrase7e-1889.4
NC_013971:3296272:3324214332421433254911278Erwinia amylovora ATCC 49946 chromosome, complete genomeintegrase7e-1889.4
NC_013592:446092:4505684505684518211254Dickeya dadantii Ech586, complete genomeintegrase family protein7e-1889.4
NC_012125:4716000:4722575472257547238221248Salmonella enterica subsp. enterica serovar Paratyphi C strainintegrase7e-1889.4
NC_016612:2009927:2022458202245820237231266Klebsiella oxytoca KCTC 1686 chromosome, complete genomephage integrase family protein9e-1889
NC_008253:3122148:3128357312835731296221266Escherichia coli 536, complete genomeputative P4-type integrase2e-1788.2
NC_016514:506611:5140645140645153201257Enterobacter cloacae EcWSU1 chromosome, complete genomeprophage P4 integrase1e-1788.2
NC_020063:4127161:4140010414001041412631254Enterobacteriaceae bacterium strain FGI 57, complete genomeIntegrase1e-1788.2
NC_009436:522649:5237605237605250221263Enterobacter sp. 638, complete genomephage integrase family protein1e-1788.2
CU928160:4570498:4575920457592045771701251Escherichia coli IAI1 chromosome, complete genomeProphage integrase1e-1788.2
NC_011741:4570498:4575920457592045771701251Escherichia coli IAI1 chromosome, complete genomeProphage integrase1e-1788.2
NC_011283:5011497:5023932502393250252061275Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase2e-1787.8
CU928145:4792703:4806663480666348079251263Escherichia coli 55989 chromosome, complete genomeProphage integrase2e-1787.8
NC_004741:3041294:3044913304491330461751263Shigella flexneri 2a str. 2457T, complete genomeputative P4-type integrase2e-1787.8
NC_011748:4792703:4806663480666348079251263Escherichia coli 55989, complete genomeProphage integrase2e-1787.8
NC_004337:3049118:3052737305273730539991263Shigella flexneri 2a str. 301, complete genomeputative P4-type integrase2e-1787.8
NC_013364:3701895:3705514370551437067731260Escherichia coli O111:H- str. 11128, complete genomeputative integrase2e-1787.8
NC_017328:3088907:3092526309252630937881263Shigella flexneri 2002017 chromosome, complete genomeSite-specific recombinase, phage integrase family protein2e-1787.8
NC_011283:1901229:1912830191283019140981269Klebsiella pneumoniae 342 chromosome, complete genomeintegrase2e-1787.8
NC_004431:4955658:4970125497012549713871263Escherichia coli CFT073, complete genomeProphage P4 integrase2e-1787.4
NC_004431:2185750:2218378221837822194211044Escherichia coli CFT073, complete genomeProphage P4 integrase2e-1787.4
NC_008253:1938975:1971537197153719725801044Escherichia coli 536, complete genomeP4-like integrase2e-1787.4
NC_020181:527592:5321935321935334551263Enterobacter aerogenes EA1509E, complete genomeIntegrase3e-1787
NC_011750:3545466:3545739354573935470041266Escherichia coli IAI39 chromosome, complete genomeProphage integrase3e-1787
NC_011745:4862218:4879739487973948810011263Escherichia coli ED1a chromosome, complete genomeProphage integrase4e-1786.7
NC_010067:3204682:3207340320734032085991260Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-1786.7
NC_013716:5201097:5270252527025252715141263Citrobacter rodentium ICC168, complete genomeintegrase4e-1786.7
NC_008253:4735418:4735418473541847366801263Escherichia coli 536, complete genomeprophage P4 integrase5e-1786.7
NC_013008:3911356:3911356391135639126211266Escherichia coli O157:H7 str. TW14359 chromosome, complete genomepathogenicity island integrase5e-1786.3
NC_011353:3956630:3956630395663039578951266Escherichia coli O157:H7 str. EC4115 chromosome, complete genomesite-specific recombinase, phage integrase family protein5e-1786.3
NC_002695:3852233:3852233385223338534981266Escherichia coli O157:H7 str. Sakai, complete genomeintegrase5e-1786.3
NC_002655:3919545:3919545391954539208101266Escherichia coli O157:H7 EDL933, complete genomeputative pathogenicity island integrase5e-1786.3
NC_011750:4947500:4950895495089549520851191Escherichia coli IAI39 chromosome, complete genomeputative integrase; KpLE2 phage-like element6e-1786.3
NC_013941:3676146:3676146367614636774111266Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeSite-specific recombinase, phage integrase family protein5e-1786.3
AP010958:5090696:5118420511842051196851266Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative integrase5e-1786.3
NC_020181:527592:5664205664205676761257Enterobacter aerogenes EA1509E, complete genomeIntegrase5e-1786.3
AP010958:3627355:3627355362735536286201266Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative integrase5e-1786.3
NC_011601:3338888:3338888333888833401531266Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeintegrase5e-1786.3
NC_013353:3627355:3627355362735536286201266Escherichia coli O103:H2 str. 12009, complete genomeintegrase5e-1786.3
NC_013353:5090696:5118420511842051196851266Escherichia coli O103:H2 str. 12009, complete genomeintegrase5e-1786.3
NC_014500:1066911:1087070108707010883291260Dickeya dadantii 3937 chromosome, complete genomeIntegrase1e-1685.5
NC_013716:3512950:355767435576743558192519Citrobacter rodentium ICC168, complete genomeputative integrase9e-1785.5
NC_013421:478586:4830894830894843481260Pectobacterium wasabiae WPP163, complete genomeintegrase family protein9e-1785.5
NC_016818:2836851:2844402284440228456701269Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeIntegrase8e-1785.5
NC_013592:956829:9771269771269783851260Dickeya dadantii Ech586, complete genomeintegrase family protein1e-1685.1
NC_014500:3097362:3126671312667131279541284Dickeya dadantii 3937 chromosome, complete genomeIntegrase1e-1685.1
NC_011283:1811000:1864670186467018659201251Klebsiella pneumoniae 342 chromosome, complete genomeintegrase1e-1685.1
NC_013592:2968500:2972189297218929734601272Dickeya dadantii Ech586, complete genomeintegrase family protein1e-1685.1
NC_017047:2079368:2111770211177021128821113Rahnella aquatilis HX2 chromosome, complete genomeintegrase family protein1e-1685.1
NC_012912:1701231:1731524173152417327951272Dickeya zeae Ech1591, complete genomeintegrase family protein2e-1684.7
NC_010159:2164500:2196574219657421978361263Yersinia pestis Angola, complete genomesite-specific recombinase, phage integrase family2e-1684.7
NC_003143:2137945:2169863216986321711251263Yersinia pestis CO92, complete genomeintegrase2e-1684.7
NC_004088:2640440:2645673264567326469351263Yersinia pestis KIM, complete genomeprophage integrase2e-1684.7
NC_005810:1794490:1826607182660718278691263Yersinia pestis biovar Microtus str. 91001, complete genomeintegrase2e-1684.7
NC_008150:1420825:1452942145294214542041263Yersinia pestis Antiqua, complete genomeintegrase2e-1684.7
NC_009381:1362471:1365074136507413663361263Yersinia pestis Pestoides F chromosome, complete genomeintegrase2e-1684.7
NC_017154:2137500:2169431216943121706931263Yersinia pestis D106004 chromosome, complete genomeintegrase2e-1684.7
NC_017160:2362002:2367208236720823684701263Yersinia pestis D182038 chromosome, complete genomeintegrase2e-1684.7
NC_013716:2139952:2167956216795621692181263Citrobacter rodentium ICC168, complete genomeintegrase1e-1684.7
NC_011283:1811000:1879467187946718807351269Klebsiella pneumoniae 342 chromosome, complete genomeintegrase2e-1684.3
NC_009648:3720000:372189037218903722753864Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative phage integrase2e-1684.3
NC_012947:3917619:3932940393294039341301191Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeintegrase3e-1684
NC_012967:4473368:4479978447997844811681191Escherichia coli B str. REL606 chromosome, complete genomeputative integrase3e-1684
NC_004337:4374500:4394738439473843959491212Shigella flexneri 2a str. 301, complete genomeputative P4-type integrase3e-1684
NC_004741:4364235:4386934438693443881451212Shigella flexneri 2a str. 2457T, complete genomeputative P4-type integrase3e-1684
NC_008258:4345400:4363338436333843645311194Shigella flexneri 5 str. 8401, complete genomeputative P4-type integrase3e-1684
NC_017328:4417000:4438449443844944396601212Shigella flexneri 2002017 chromosome, complete genomeputative P4-type integrase3e-1684
NC_000913:4494773:4494773449477344959631191Escherichia coli K12, complete genomeKpLE2 phage-like element; predicted integrase3e-1684
NC_010473:4596500:4596581459658145977711191Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; predicted integrase3e-1684
AC_000091:4501430:4501430450143045026201191Escherichia coli W3110 DNA, complete genomepredicted integrase3e-1684
NC_015061:1251905:1270945127094512721801236Rahnella sp. Y9602 chromosome, complete genomeintegrase family protein3e-1683.6
NC_016612:5231065:5252187525218752534551269Klebsiella oxytoca KCTC 1686 chromosome, complete genomeintegrase family protein4e-1683.6
NC_015663:1902344:1922832192283219240881257Enterobacter aerogenes KCTC 2190 chromosome, complete genomeprothage integrase5e-1683.2
NC_010468:1816359:1844582184458218458441263Escherichia coli ATCC 8739, complete genome6e-1682.8
NC_013592:1668092:1675312167531216765951284Dickeya dadantii Ech586, complete genomeintegrase family protein8e-1682.4
NC_013421:1819036:1844711184471118459821272Pectobacterium wasabiae WPP163, complete genomeintegrase family protein7e-1682.4
NC_016832:948029:9751729751729764461275Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,CP4-like integrase1e-1581.6
NC_012731:560199:5662635662635679451683Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeintegrase2e-1581.3
NC_011274:2044000:2052521205252120538611341Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91phage integrase2e-1580.9
NC_011294:2053991:2061363206136320626371275Salmonella enterica subsp. enterica serovar Enteritidis strphage integrase2e-1580.9
NC_016831:947281:9806799806799819531275Salmonella enterica subsp. enterica serovar Gallinarum/pullorumphage integrase2e-1580.9
NC_011149:1987291:1996529199652919978031275Salmonella enterica subsp. enterica serovar Agona str. SL483,integrase2e-1580.9
NC_012214:1650523:1670282167028216714991218Erwinia pyrifoliae Ep1/96, complete genomePhage integrase family protein2e-1580.9
NC_009648:5119271:5126372512637251278591488Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative phage integrase2e-1580.9
NC_011205:2180598:2188380218838021896541275Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853integrase3e-1580.5
NC_011601:2139188:2171614217161421728821269Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeintegrase3e-1580.5
NC_007492:3462929:3504962350496235062781317Pseudomonas fluorescens PfO-1, complete genomePhage integrase4e-1580.1
NC_011745:2209288:2237821223782122390951275Escherichia coli ED1a chromosome, complete genomeProphage integrase5e-1579.7
NC_003198:4513900:4541654454165445429131260Salmonella enterica subsp. enterica serovar Typhi str. CT18,bacteriophage integrase5e-1579.7
NC_003198:4513900:453979945397994540077279Salmonella enterica subsp. enterica serovar Typhi str. CT18,integrase (fragment)7e-1579.3
NC_012917:985617:9985629985629998211260Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein7e-1579.3
NC_012912:4012112:4016665401666540179241260Dickeya zeae Ech1591, complete genomeintegrase family protein1e-1478.6
NC_007613:4217557:4227410422741042286751266Shigella boydii Sb227, complete genomeputative P4-type integrase1e-1478.6
NC_012917:569856:5834835834835847421260Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein1e-1478.6
NC_012880:3529017:3532001353200135332601260Dickeya dadantii Ech703, complete genomeintegrase family protein1e-1478.6
NC_016845:575123:5819525819525832141263Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative P4-type integrase2e-1478.2
NC_013421:3752619:3755687375568737569461260Pectobacterium wasabiae WPP163, complete genomeintegrase family protein2e-1478.2
NC_012880:3982383:3987035398703539883091275Dickeya dadantii Ech703, complete genomeintegrase family protein2e-1477.8
NC_013421:1696746:1714725171472517160021278Pectobacterium wasabiae WPP163, complete genomeintegrase family protein2e-1477.8
NC_004547:3207776:3236381323638132376671287Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeintegrase2e-1477.8
NC_003198:4676536:4683853468385346851181266Salmonella enterica subsp. enterica serovar Typhi str. CT18,integrase2e-1477.8
NC_004631:4661000:4666742466674246680071266Salmonella enterica subsp. enterica serovar Typhi Ty2, completeintegrase2e-1477.8
NC_016830:381049:3948993948993959811083Pseudomonas fluorescens F113 chromosome, complete genomeintegrase2e-1477.4
NC_011601:2139188:216799921679992168220222Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome3e-1477.4
NC_012880:2871480:2879871287987128811571287Dickeya dadantii Ech703, complete genomeintegrase family protein3e-1477.4
NC_004547:1873390:1925682192568219269591278Erwinia carotovora subsp. atroseptica SCRI1043, complete genomephage integrase4e-1477
NC_011080:4703266:4709793470979347110581266Salmonella enterica subsp. enterica serovar Newport str. SL254,integrase4e-1476.6
NC_016822:3420826:342219434221943422421228Shigella sonnei 53G, complete genomeProphage integrase4e-1476.6
NC_015968:3301958:3321719332171933230081290Enterobacter asburiae LF7a chromosome, complete genomeintegrase family protein5e-1476.3
NC_014306:4376012:4416594441659444178471254Erwinia billingiae Eb661, complete genomeIntegrase1e-1375.1
NC_013892:3278647:3282924328292432841951272Xenorhabdus bovienii SS-2004 chromosome, complete genomeKpLE2 phage-like element; P4-like integrase2e-1373.9
NC_012912:4194821:4203430420343042046891260Dickeya zeae Ech1591, complete genomeintegrase family protein5e-1373.2
NC_012880:4117376:4124824412482441260831260Dickeya dadantii Ech703, complete genomeintegrase family protein5e-1373.2
NC_014500:443874:4519574519574532191263Dickeya dadantii 3937 chromosome, complete genomeIntegrase6e-1372.8
NC_010501:5442000:5448592544859254499111320Pseudomonas putida W619, complete genomeintegrase family protein6e-1372.8
NC_014121:677799:683567683567683791225Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative integrase4e-1063.5
NC_010067:4418000:443674444367444437052309Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-1062.8