Pre_GI: BLASTP Hits

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Query: NC_009140:60806:84296 Salmonella enterica enterica sv Newport str. SL254, complete

Start: 84296, End: 84826, Length: 531

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014228:2270000:230223823022382302768531Xenorhabdus nematophila ATCC 19061, complete genomeConjugation signal peptidase8e-96348
NC_010554:2646806:268840726884072688919513Proteus mirabilis HI4320, complete genomeplasmid conjugation signal peptidase1e-39162
NC_018012:1628364:164629216462921646861570Thiocystis violascens DSM 198 chromosome, complete genomesignal peptidase I2e-1789
NC_014394:993465:995412995412995942531Gallionella capsiferriformans ES-2 chromosome, complete genomePeptidase S26, conserved region1e-1066.2
NC_007759:1740702:175576017557601756245486Syntrophus aciditrophicus SB, complete genometype IV secretory protease2e-0755.1
NC_010814:243384:282137282137282631495Geobacter lovleyi SZ, complete genometype IV secretory protease4e-0754.3
NC_011297:1357947:136038813603881360951564Dictyoglomus thermophilum H-6-12, complete genomesignal peptidase I2e-0651.6