Pre_GI: BLASTP Hits

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Query: NC_009092:2589000:2589005 Shewanella loihica PV-4, complete genome

Start: 2589005, End: 2591644, Length: 2640

Host Lineage: Shewanella loihica; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is an environmental isolate from the Naha Vents, Hawaii, in the Pacific Ocean. Psychrotolerant bacterium. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. Shewanella loihica is a psychrotolerant deep sea bacterium. This organism is able to reduce iron, manganese and uranium and may be useful for bioremediation at low temperatures.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009792:1479779:1479779147977914817221944Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-28127
NC_009663:982048:9820489820489840722025Sulfurovum sp. NBC37-1, complete genomehypothetical protein1e-1896.3
NC_004603:1115134:1117611111761111200312421Vibrio parahaemolyticus RIMD 2210633 chromosome I, completesensor histidine kinase9e-1686.3
NC_014355:3435343:3456236345623634590102775Candidatus Nitrospira defluvii, complete genomeputative sensor histidine kinase1e-1585.9
NC_013456:2528284:2539916253991625423362421Vibrio sp. Ex25 chromosome 1, complete genomesensor histidine kinase2e-1481.6
NC_016616:134449:1580331580331600692037Dechlorosoma suillum PS chromosome, complete genomePAS domain S-box9e-1479.7
NC_007298:2769525:2787923278792327899382016Dechloromonas aromatica RCB, complete genomePAS2e-1275.1
NC_012660:3689223:3714593371459337165871995Pseudomonas fluorescens SBW25 chromosome, complete genomeputative methyl-accepting chemotaxis receptor protein6e-1170.5
NC_012029:904780:9175849175849195511968Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete genomemulti-sensor signal transduction histidine kinase6e-1067
NC_018012:1076839:1097004109700411013204317Thiocystis violascens DSM 198 chromosome, complete genomePAS domain-containing protein1e-0965.9
NC_010162:9502480:9523351952335195254952145Sorangium cellulosum 'So ce 56', complete genometwo-component hybrid sensor and regulator2e-0965.5
NC_007298:1721425:1730792173079217334132622Dechloromonas aromatica RCB, complete genomePAS3e-0964.7
NC_020291:2701149:2708618270861827102461629Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomePAS domain S-box3e-0964.7
NC_007645:3870466:3884946388494638869341989Hahella chejuensis KCTC 2396, complete genomeMethyl-accepting chemotaxis protein2e-0862.4
NC_014972:1923035:1935850193585019381862337Desulfobulbus propionicus DSM 2032 chromosome, complete genomemulti-sensor hybrid histidine kinase3e-0861.6
NC_010337:147664:1798621798621819192058Heliobacterium modesticaldum Ice1, complete genomemethyl-accepting chemotaxis protein3e-0861.6
NC_014623:5350116:5368481536848153706552175Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesensor protein1e-0759.7
NC_012796:2090000:2110201211020121118291629Desulfovibrio magneticus RS-1, complete genomeputative sensor histidine kinase2e-0758.5
NC_010162:7620000:7642092764209276481516060Sorangium cellulosum 'So ce 56', complete genomeprotein kinase5e-0757.4
NC_010571:3322467:3340109334010933438733765Opitutus terrae PB90-1, complete genomePAS/PAC sensor signal transduction histidine kinase4e-0757.4
NC_014253:431942:4453354453354474642130Methanohalobium evestigatum Z-7303 chromosome, complete genomesignal transduction histidine kinase1e-0656.2
NC_010995:1459831:1474498147449814768162319Cellvibrio japonicus Ueda107, complete genomesensory box/GGDEF family protein2e-0655.1
NC_009483:3173464:3183932318393231867212790Geobacter uraniireducens Rf4 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase8e-0653.1
NC_014394:2228470:2238632223863222426634032Gallionella capsiferriformans ES-2 chromosome, complete genomemulti-sensor signal transduction histidine kinase1e-0553.1