Pre_GI: BLASTP Hits

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Query: NC_009089:478328:485020 Clostridium difficile 630, complete genome

Start: 485020, End: 485331, Length: 312

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012471:719000:726631726631726942312Streptococcus equi subsp. equi 4047, complete genomesingle-strand binding protein2e-42170
NC_013316:2033906:207602020760202076331312Clostridium difficile R20291, complete genomeputative conjugal transfer protein (putative single-stranded dna binding protein)6e-38155
NC_013164:67500:684266842668737312Anaerococcus prevotii DSM 20548 plasmid pAPRE01, complete sequencehypothetical protein4e-30130
NC_009089:478328:504870504870505547678Clostridium difficile 630, complete genomeputative single-strand binding protein3e-1063.9
NC_013316:2033906:210713721071372107814678Clostridium difficile R20291, complete genomehypothetical protein3e-1063.5
NC_012471:719000:750561750561751220660Streptococcus equi subsp. equi 4047, complete genomeconjugative transposon conserved hypothetical protein1e-0962
NC_012470:1390285:140148214014821402141660Streptococcus equi subsp. zooepidemicus, complete genomehypothetical protein3e-0960.5
NC_009089:2150062:216482921648292165506678Clostridium difficile 630, complete genomeputative conjugative transposon conserved hypothetical protein5e-0959.7
NC_012470:1390285:141717914171791417838660Streptococcus equi subsp. zooepidemicus, complete genomehypothetical protein2e-0857.8
NC_016630:1247251:127364812736481274466819Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein4e-0856.6
NC_013895:1332832:137276913727691373428660Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completesingle-strand binding family protein8e-0855.8
NC_013515:715009:738563738563739210648Streptobacillus moniliformis DSM 12112, complete genomehypothetical protein1e-0755.5
NC_012471:1197534:1236379123637912378181440Streptococcus equi subsp. equi 4047, complete genomeconjugative transposon single-strand binding protein7e-0752.4