Pre_GI: BLASTP Hits

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Query: NC_009089:4177117:4181832 Clostridium difficile 630, complete genome

Start: 4181832, End: 4182497, Length: 666

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009655:1357486:136085113608511361567717Actinobacillus succinogenes 130Z chromosome, complete genometRNA pseudouridine synthase C2e-1685.5
NC_016513:54802:551875518756146960Aggregatibacter actinomycetemcomitans ANH9381 chromosome, complete23S rRNA pseudouridylate synthase C1e-21103
NC_016513:1529691:153521415352141535909696Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completepseudouridine synthase Rlu family protein2e-0652.8
NC_012913:1832500:183708618370861837745660Aggregatibacter aphrophilus NJ8700, complete genomeribosomal large subunit pseudouridine synthase A2e-1582.8
NC_008260:497855:517349517349518320972Alcanivorax borkumensis SK2, complete genomepseudouridylate synthase9e-1787
NC_018691:3041851:304259830425983043554957Alcanivorax dieselolei B5 chromosome, complete genomePseudouridine synthase5e-1064.7
NC_018643:673195:675234675234676145912Alpha proteobacterium HIMB5 chromosome, complete genomeRNA pseudouridylate synthase,S4 domain-containing protein5e-1581.3
NC_012026:415447:426791426791427681891Anaplasma marginale str. Florida, complete genomeribosomal large subunit pseudouridine synthase (rluC)3e-1168.9
NC_017187:10320:237642376424666903Arcobacter butzleri ED-1, complete genomeribosomal large subunit pseudouridine synthase1e-1066.2
NC_009850:11076:243402434025242903Arcobacter butzleri RM4018, complete genomeribosomal large subunit pseudouridine synthase2e-1066.2
NC_014166:2498500:250372525037252504474750Arcobacter nitrofigilis DSM 7299 chromosome, complete genomepseudouridine synthase1e-1066.6
NC_013203:472679:473622473622474362741Atopobium parvulum DSM 20469, complete genomepseudouridine synthase7e-1477.4
NC_008702:2039462:204514720451472045857711Azoarcus sp. BH72, complete genomepseudouridine synthase A5e-1064.3
NC_008702:1094663:109466310946631095637975Azoarcus sp. BH72, complete genomepseudouridylate synthase6e-21100
NC_007530:3694940:371143137114313712339909Bacillus anthracis str. 'Ames Ancestor', complete genome3e-1788.6
NC_012659:3692803:371133137113313712239909Bacillus anthracis str. A0248, complete genomeribosomal large subunit pseudouridine synthase, RluA family3e-1788.6
NC_003997:3692776:371130437113043712212909Bacillus anthracis str. Ames, complete genome3e-1788.6
NC_012581:519969:526537526537527256720Bacillus anthracis str. CDC 684 chromosome, complete genomeribosomal large subunit pseudouridine synthase, RluA family2e-1789.4
NC_005945:3693471:371199937119993712907909Bacillus anthracis str. Sterne, complete genomeRNA pseudouridylate synthase3e-1788.6
NC_012472:3743473:375933137593313760239909Bacillus cereus 03BB102, complete genomeribosomal large subunit pseudouridine synthase, RluA family3e-1788.6
NC_011658:3680829:369987836998783700786909Bacillus cereus AH187 chromosome, complete genomeRluA family ribosomal large subunit pseudouridine synthase3e-1788.6
NC_011773:3729500:374609037460903746998909Bacillus cereus AH820 chromosome, complete genomeribosomal large subunit pseudouridine synthase, RluA family3e-1788.6
NC_003909:3671468:368929036892903690198909Bacillus cereus ATCC 10987, complete genomeribosomal large subunit pseudouridine synthase, RluD subfamily3e-1788.6
NC_004722:3855326:387346538734653874373909Bacillus cereus ATCC 14579, complete genomeRibosomal large subunit pseudouridine synthase D3e-1788.2
NC_011725:3897450:391551739155173916425909Bacillus cereus B4264 chromosome, complete genomeribosomal large subunit pseudouridine synthase, RluA family3e-1788.2
NC_014335:3645500:366205736620573662965909Bacillus cereus biovar anthracis str. CI chromosome, completeribosomal large subunit pseudouridylate synthase D3e-1788.6
NC_006274:3773335:379174037917403792648909Bacillus cereus E33L, complete genomepseudouridylate synthase (pseudouridine synthase)3e-1788.6
NC_016779:3660000:367716336771633678071909Bacillus cereus F837/76 chromosome, complete genomeRibosomal large subunit pseudouridine synthase D3e-1788.6
NC_011772:3863166:388159338815933882501909Bacillus cereus G9842, complete genomeribosomal large subunit pseudouridine synthase, RluA family4e-1788.2
NC_016771:3633327:365237636523763653284909Bacillus cereus NC7401, complete genomeribosomal large subunit pseudouridine synthase D3e-1788.6
NC_011969:3627980:364383736438373644745909Bacillus cereus Q1 chromosome, complete genomeribosomal large subunit pseudouridine synthase, rlud subfamily3e-1788.6
NC_009674:2624817:264239926423992643307909Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeRluA family pseudouridine synthase2e-1789
NC_002570:2649759:266682626668262667743918Bacillus halodurans C-125, complete genomehypothetical protein8e-21100
NC_014019:4094750:410837941083794109293915Bacillus megaterium QM B1551 chromosome, complete genomepseudouridine synthase7e-1994
NC_017138:980696:984464984464985378915Bacillus megaterium WSH-002 chromosome, complete genomeRNA pseudouridine synthase ylyB8e-1994
NC_009848:1494253:149811214981121499026915Bacillus pumilus SAFR-032, complete genomepseudouridylate synthase5e-1891.3
NC_014219:1736000:175471317547131755630918Bacillus selenitireducens MLS10 chromosome, complete genomepseudouridine synthase3e-0858.9
NC_021171:1354000:135505513550551355966912Bacillus sp. 1NLA3E, complete genomepseudouridylate synthase6e-1787.8
NC_014171:3779956:379633737963373797245909Bacillus thuringiensis BMB171 chromosome, complete genomeribosomal large subunit pseudouridine synthase D3e-1788.2
NC_017208:3897253:391311939131193914027909Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeribosomal large subunit pseudouridine synthase D4e-1788.2
NC_017200:3737185:375617137561713757079909Bacillus thuringiensis serovar finitimus YBT-020 chromosome,23S rRNA pseudouridine synthase D3e-1788.6
NC_005957:3716487:373349837334983734406909Bacillus thuringiensis serovar konkukian str. 97-27, completeribosomal large subunit pseudouridine synthase D3e-1788.6
NC_008600:3724312:374201937420193742927909Bacillus thuringiensis str. Al Hakam, complete genomeribosomal large subunit pseudouridine synthase D3e-1788.6
NC_010184:3757000:377138237713823772290909Bacillus weihenstephanensis KBAB4, complete genomepseudouridine synthase, RluA family3e-1892
NC_003228:2973266:299588229958822996799918Bacteroides fragilis NCTC 9343, complete genomeputative RNA pseudouridylate synthase3e-21101
NC_009614:769851:7765477765477776231077Bacteroides vulgatus ATCC 8482 chromosome, complete genomeribosomal large subunit pseudouridine synthase D3e-21102
NC_014932:985882:100577010057701006753984Bartonella clarridgeiae 73, complete genomeribosomal large subunit pseudouridine synthase C1e-1996.3
NC_013172:2556517:255907925590792560035957Brachybacterium faecium DSM 4810, complete genomepseudouridine synthase, RluA family5e-1374.3
NC_012225:2198987:221853322185332219522990Brachyspira hyodysenteriae WA1, complete genomePseudouridylate synthase2e-22105
NC_009485:7021228:704256170425617043541981Bradyrhizobium sp. BTAi1 chromosome, complete genomeribosomal large subunit pseudouridine synthase D3e-1375.5
NC_009445:1453132:1457253145725314584071155Bradyrhizobium sp. ORS 278 chromosome, complete genomepseudouridine synthase7e-1684
NC_010742:1595065:1617689161768916186931005Brucella abortus S19 chromosome 1, complete sequenceribosomal large subunit pseudouridine synthase, RluD subfamily3e-1995.1
NC_010103:1577750:1600373160037316014161044Brucella canis ATCC 23365 chromosome I, complete sequencepseudouridine synthase, RluA family4e-1994.7
NC_007618:1593886:1616512161651216175161005Brucella melitensis biovar Abortus 2308 chromosome I, completePrenyl group binding site (CAAX box):RNA-binding S4:Pseudouridine synthase:Pseudouridine synthase, Rlu:Pseudouridine synthase...3e-1995.1
NC_014721:1629063:164993016499301650865936Caldicellulosiruptor kristjanssonii 177R1B chromosome, completepseudouridine synthase4e-1685.1
NC_014758:310394:318140318140319102963Calditerrivibrio nitroreducens DSM 19672 chromosome, completepseudouridine synthase, rlua family4e-1375.1
NC_017294:327433:345339345339346328990Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomeribosomal large subunit pseudouridine synthase C7e-1580.5
NC_016012:396910:403771403771404670900Candidatus Arthromitus sp. SFB-rat-Yit, complete genomepseudouridine synthase, RluA family5e-1787.8
NC_014909:219498:2194982194982204991002Candidatus Blochmannia vafer str. BVAF chromosome, complete genomeribosomal large subunit pseudouridine synthase D1e-1893.2
NC_018507:339000:341539341539342468930Candidatus Portiera aleyrodidarum BT-B chromosome, complete genome23S RNA-specific pseudouridylate synthase1e-0859.7
NC_018677:329829:334956334956335885930Candidatus Portiera aleyrodidarum BT-B-HRs chromosome, completeRibosomal large subunit pseudouridine synthase D1e-0859.7
NC_014109:27500:406304063041478849Candidatus Riesia pediculicola USDA chromosome, complete genomeribosomal large subunit pseudouridine synthase D7e-1477.4
NC_013123:59918:618716187162611741Candidatus Sulcia muelleri SMDSEM, complete genomeputative RNA pseudouridine synthase fragment1e-1170.1
NC_009465:29735:805698056981480912Candidatus Vesicomyosocius okutanii HA, complete genomeribosomal large subunit pseudouridine synthase C3e-1375.1
NC_015391:1248583:125300512530051253910906Carnobacterium sp. 17-4 chromosome, complete genomepseudouridylate synthase3e-1891.7
NC_014100:533322:5553445553445563661023Caulobacter segnis ATCC 21756 chromosome, complete genomepseudouridine synthase1e-1583.6
NC_010995:3821327:382290638229063823868963Cellvibrio japonicus Ueda107, complete genomepseudouridine synthase, RluA family subfamily2e-1685.5
NC_013132:5462652:5483579548357954852911713Chitinophaga pinensis DSM 2588, complete genomepseudouridine synthase6e-0960.8
NC_011027:760221:7744797744797755281050Chlorobaculum parvum NCIB 8327, complete genomepseudouridine synthase, RluA family3e-1478.6
NC_009337:1200722:1200722120072212017711050Chlorobium phaeovibrioides DSM 265 chromosome, complete genomeribosomal large subunit pseudouridine synthase D1e-1066.2
NC_011898:702983:705182705182706096915Clostridium cellulolyticum H10, complete genomepseudouridine synthase, RluA family8e-21100
NC_017179:1133510:114406111440611144963903Clostridium difficile BI1, complete genomepseudouridylate synthase4e-1994.7
NC_017179:3984000:398738739873873988052666Clostridium difficile BI1, complete genomepseudouridylate synthase2e-119427
NC_013315:1123733:113434111343411135186846Clostridium difficile CD196 chromosome, complete genomepseudouridylate synthase4e-1994.7
NC_013315:3978495:397936739793673980032666Clostridium difficile CD196 chromosome, complete genomepseudouridylate synthase2e-119427
NC_003366:2106937:212096721209672121887921Clostridium perfringens str. 13, complete genomehypothetical protein7e-23107
NC_010001:3369500:3394840339484033958801041Clostridium phytofermentans ISDg, complete genomepseudouridine synthase, RluA family3e-1478.6
NC_017030:7514500:753649575364957537421927Corallococcus coralloides DSM 2259 chromosome, complete genomeRluA family pseudouridine synthase6e-1270.9
NC_003450:2244862:226000022600002260932933Corynebacterium glutamicum ATCC 13032, complete genome23S RNA-specific pseudouridylate synthase1e-1377
NC_006958:2214893:223003222300322230964933Corynebacterium glutamicum ATCC 13032, complete genomeRIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE D1e-1377
NC_009342:2211000:222400222240022224934933Corynebacterium glutamicum R chromosome, complete genomehypothetical protein1e-1377
NC_015683:2469481:2479631247963124806381008Corynebacterium ulcerans BR-AD22 chromosome, complete genomehypothetical protein4e-0755.1
NC_007298:1721425:172142517214251722381957Dechloromonas aromatica RCB, complete genomePseudouridine synthase, RluD6e-22104
NC_019903:2806466:282159028215902822588999Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,ribosomal large subunit pseudouridine synthase D1e-24113
NC_007907:3230513:326353232635323264434903Desulfitobacterium hafniense Y51, complete genomehypothetical protein4e-24111
NC_018645:247917:263207263207263935729Desulfobacula toluolica Tol2, complete genomeRNA pseudouridine synthase8e-21100
NC_018515:3959681:397556839755683976539972Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeribosomal large subunit pseudouridine synthase D1e-1996.7
NC_016584:4961688:4980519498051949815381020Desulfosporosinus orientis DSM 765 chromosome, complete genomeRluA family pseudouridine synthase1e-21102
NC_016584:3617439:363894836389483639841894Desulfosporosinus orientis DSM 765 chromosome, complete genomeRluA family pseudouridine synthase4e-1788.2
NC_016629:3543432:3558324355832435599941671Desulfovibrio africanus str. Walvis Bay chromosome, completedephospho-CoA kinase9e-1787
NC_020409:297258:301476301476302306831Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completePseudouridine synthase2e-0653.1
NC_012912:1788308:184304218430421844004963Dickeya zeae Ech1591, complete genomepseudouridine synthase, RluA family4e-1788.2
NC_012912:647369:648463648463649116654Dickeya zeae Ech1591, complete genomepseudouridine synthase2e-1892.4
NC_012214:1212616:123037912303791231077699Erwinia pyrifoliae Ep1/96, complete genomePseudouridine synthase4e-1375.1
CU928160:2785792:280209728020972803077981Escherichia coli IAI1 chromosome, complete genome23S rRNA pseudouridine synthase1e-1686.7
CP002516:1196000:119891411989141199894981Escherichia coli KO11, complete genomepseudouridine synthase, RluA family1e-1686.7
CP002185:2889656:290596329059632906943981Escherichia coli W, complete genome23S rRNA pseudouridine synthase1e-1686.7
NC_009718:1183816:120278612027861203730945Fervidobacterium nodosum Rt17-B1, complete genomeRluA family pseudouridine synthase5e-1684.3
NC_017095:1429298:1429298142929814303321035Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeRluA family pseudouridine synthase7e-1684
NC_015672:203139:208600208600209523924Flexistipes sinusarabici DSM 4947 chromosome, complete genomeRluA family pseudouridine synthase2e-0962.4
NC_010336:996661:102939210293921030321930Francisella philomiragia subsp. philomiragia ATCC 25017, completeLysozyme1e-1170.1
NC_015696:517941:550841550841551764924Francisella sp. TX077308 chromosome, complete genomeribosomal large subunit pseudouridine synthase C7e-1167.4
NC_009749:1699152:173248617324861733415930Francisella tularensis subsp. holarctica FTA, complete genomepseudouridine synthase, RluA family2e-1169.7
NC_008369:1702885:173621917362191737148930Francisella tularensis subsp. holarctica OSU18, complete genomepseudouridylate synthase2e-1169.3
NC_007880:1703346:173658917365891737518930Francisella tularensis subsp. holarctica, complete genomeribosomal large subunit pseudouridine synthase C2e-1169.3
NC_010677:96470:129164129164130093930Francisella tularensis subsp. mediasiatica FSC147, complete genomeribosomal large subunit pseudouridine synthase C4e-1168.2
NC_008601:1733940:176808817680881769017930Francisella tularensis subsp. novicida U112, complete genomeribosomal large subunit pseudouridine synthase C2e-1169.7
NC_008245:24652:573315733158260930Francisella tularensis subsp. tularensis FSC 198, complete genomeribosomal large subunit pseudouridine synthase C2e-1169.7
NC_006570:24636:573155731558244930Francisella tularensis subsp. tularensis Schu 4, complete genomeribosomal large subunit pseudouridine synthase C2e-1169.7
NC_016937:24654:573335733358262930Francisella tularensis subsp. tularensis TI0902 chromosome,ribosomal large subunit pseudouridine synthase C2e-1169.7
NC_009257:109528:142216142216143145930Francisella tularensis subsp. tularensis WY96-3418 chromosome,ribosomal large subunit pseudouridine synthase C2e-1169.3
NC_016933:24654:573335733358262930Francisella tularensis TIGB03 chromosome, complete genomeribosomal large subunit pseudouridine synthase C2e-1169.7
NC_014394:1325616:134437013443701345329960Gallionella capsiferriformans ES-2 chromosome, complete genomepseudouridine synthase, RluA family8e-1787
NC_012489:4336790:4336790433679043382201431Gemmatimonas aurantiaca T-27, complete genomeribosomal large subunit pseudouridine synthase A4e-1168.2
NC_011146:4070000:407167040716704072563894Geobacter bemidjiensis Bem, complete genomepseudouridine synthase, RluA family2e-1066.2
NC_011365:502620:518134518134519102969Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeRluA family pseudouridine synthase4e-22104
NC_010125:2295500:230997723099772310864888Gluconacetobacter diazotrophicus PAl 5, complete genomeputative ribosomal large subunit pseudouridine synthase D3e-22105
NC_007645:6049340:605012060501206051079960Hahella chejuensis KCTC 2396, complete genomePseudouridylate synthases, 23S RNA-specific6e-1684.3
NC_007645:2181739:218907821890782190025948Hahella chejuensis KCTC 2396, complete genomePseudouridylate synthases, 23S RNA-specific9e-1373.6
NC_007645:2294553:229617922961792297072894Hahella chejuensis KCTC 2396, complete genomePseudouridylate synthases, 23S RNA-specific3e-1272
NC_019978:875941:888249888249889166918Halobacteroides halobius DSM 5150, complete genomepseudouridine synthase, RluA family2e-1789
NC_009138:2242470:225216222521622252833672Herminiimonas arsenicoxydans, complete genome23S rRNA pseudouridylate 746 synthase2e-1375.5
NC_015557:1412917:141710014171001418026927Hydrogenobaculum sp. 3684 chromosome, complete genomepseudouridine synthase, RluA family2e-1892.8
NC_015587:1414304:141696814169681417894927Hydrogenobaculum sp. SHO chromosome, complete genomepseudouridine synthase, RluA family2e-1892.8
NC_011126:1430608:143480014348001435726927Hydrogenobaculum sp. Y04AAS1, complete genomepseudouridine synthase, RluA family3e-1891.7
NC_014313:2059933:2064023206402320650571035Hyphomicrobium denitrificans ATCC 51888 chromosome, completepseudouridine synthase, RluA family2e-1685.5
NC_013166:1149760:114878911487891149763975Kangiella koreensis DSM 16069, complete genomepseudouridine synthase, RluA family2e-1789
NC_012731:3193880:321645132164513217149699Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative ribosomal large subunit pseudouridine synthase A1e-1479.7
NC_016845:3238507:326525132652513266042792Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative ribosomal large subunit pseudouridine synthase A2e-1479.3
NC_009648:2465613:249404424940442494835792Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative ribosomal large subunit pseudouridine synthase A4e-1478.2
NC_009648:3192483:320831432083143209294981Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome23S rRNA pseudouridine synthase D6e-1787.4
NC_013850:1198134:120102512010251202005981Klebsiella variicola At-22 chromosome, complete genomepseudouridine synthase, RluA family6e-1890.9
NC_014727:1512546:151880015188001519648849Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,pseudouridylate synthase, 23S RNA-specific1e-1066.6
NC_009513:618000:638140638140639045906Lactobacillus reuteri F275, complete genomepseudouridine synthase, RluA family1e-1686.7
NC_015697:1814128:184096018409601841865906Lactobacillus reuteri SD2112 chromosome, complete genomeribosomal large subunit pseudouridine synthase9e-1787
NC_003212:1958500:197392719739271974835909Listeria innocua Clip11262, complete genomehypothetical protein4e-22104
NC_013768:1983711:200471120047112005622912Listeria monocytogenes 08-5923, complete genomehypothetical protein1e-21103
NC_003210:1904152:191952519195251920436912Listeria monocytogenes EGD-e, complete genomehypothetical protein1e-21103
NC_002973:1877905:189889918988991899810912Listeria monocytogenes str. 4b F2365, complete genomeribosomal large subunit pseudouridine synthase, RluD subfamily5e-22104
NC_013891:1861294:187775718777571878668912Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomeribosomal large subunit pseudouridine synthase, RluD subfamily3e-21102
NC_008555:1874878:189348218934821894390909Listeria welshimeri serovar 6b str. SLCC5334, complete genomeRibosomal large subunit pseudouridine synthase2e-21102
NC_011999:813978:826241826241827146906Macrococcus caseolyticus JCSC5402, complete genomehypothetical protein2e-1685.5
NC_016751:1700164:170744917074491708372924Marinitoga piezophila KA3 chromosome, complete genomeRluA family pseudouridine synthase2e-22105
NC_008740:979830:998331998331999308978Marinobacter aquaeolei VT8, complete genomepseudouridine synthase, RluA family5e-2097.8
NC_015276:2171355:218401821840182184992975Marinomonas mediterranea MMB-1 chromosome, complete genomepseudouridine synthase, RluA family7e-1787.4
NC_015516:1222632:124152312415231242431909Melissococcus plutonius ATCC 35311, complete genomeribosomal large subunit pseudouridine synthase D1e-2099.8
NC_012808:157156:1793321793321807231392Methylobacterium extorquens AM1, complete genomePseudouridine synthase, RluD6e-1684.3
NC_012808:806432:809836809836810828993Methylobacterium extorquens AM1, complete genomeribosomal large subunit pseudouridine synthase D (Pseudouridylate synthase) (Uracil hydrolyase)2e-1685.5
NC_010172:1079127:1083687108368710847181032Methylobacterium extorquens PA1, complete genomepseudouridine synthase, RluA family3e-1788.2
NC_010725:356609:3759603759603773001341Methylobacterium populi BJ001, complete genomepseudouridine synthase, RluA family1e-1583.6
NC_010505:5967324:5971609597160959726131005Methylobacterium radiotolerans JCM 2831, complete genomepseudouridine synthase, RluA family4e-1891.7
NC_012968:865465:8860638860638870851023Methylotenera mobilis JLW8, complete genomepseudouridine synthase, RluA family2e-1685.9
NC_017503:770451:784883784883785818936Mycoplasma gallisepticum str. F chromosome, complete genomePseudouridine synthase1e-1892.8
NC_015711:4811349:481618448161844817134951Myxococcus fulvus HW-1 chromosome, complete genomeRluA family pseudouridine synthase3e-1788.6
NC_012115:1415827:141892314189231419684762Nautilia profundicola AmH, complete genomeribosomal pseudouridine synthase1e-0860.1
NC_010120:662969:6770656770656782431179Neisseria meningitidis 053442, complete genomeribosomal large subunit pseudouridine synthase D6e-1684.3
NC_017501:1633436:1637405163740516385291125Neisseria meningitidis 8013, complete genomeribosomal large subunit pseudouridine synthase D (rRNA-uridine isomerase D; rRNA pseudouridylate synthase D)1e-1686.7
NC_013016:633313:6471546471546482781125Neisseria meningitidis alpha14 chromosome, complete genomeribosomal large subunit pseudouridine synthase D2e-1685.9
NC_017505:721395:7385977385977397211125Neisseria meningitidis alpha710 chromosome, complete genomeputative ribosomal large subunit pseudouridine synthase D2e-1685.9
NC_017514:1520245:1521345152134515224691125Neisseria meningitidis M01-240149 chromosome, complete genomeribosomal large subunit pseudouridine synthase D6e-1787.4
NC_017517:749031:7670517670517681751125Neisseria meningitidis M01-240355 chromosome, complete genomeribosomal large subunit pseudouridine synthase D1e-1686.7
NC_017515:1555500:1556639155663915577631125Neisseria meningitidis M04-240196 chromosome, complete genomeribosomal large subunit pseudouridine synthase D1e-1686.3
NC_003112:719490:7356717356717367951125Neisseria meningitidis MC58, complete genomeribosomal large subunit pseudouridine synthase D9e-1683.6
NC_017518:795113:8123148123148134381125Neisseria meningitidis NZ-05/33 chromosome, complete genomeribosomal large subunit pseudouridine synthase D6e-1787.4
NC_017512:642229:6553816553816565591179Neisseria meningitidis WUE 2594, complete genomeribosomal large subunit pseudouridine synthase D7e-1787.4
NC_003116:867943:8845868845868857101125Neisseria meningitidis Z2491, complete genomeribosomal large subunit pseudouridine synthase D1e-1686.3
NC_013009:122000:129077129077130024948Neorickettsia risticii str. Illinois, complete genomeribosomal large subunit pseudouridine synthase, RluA family3e-1995.1
NC_007798:112840:118090118090119082993Neorickettsia sennetsu str. Miyayama, complete genomeribosomal large subunit pseudouridine synthases, RluA family1e-1893.6
NC_014935:836868:856068856068857051984Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeribosomal large subunit pseudouridine synthase d6e-1580.9
NC_007484:2893878:290025929002592901218960Nitrosococcus oceani ATCC 19707, complete genomePseudouridine synthase, RluD8e-1270.5
NC_009667:1076718:109454710945471095215669Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequencepseudouridine synthase4e-1168.2
NC_015160:585220:604386604386605078693Odoribacter splanchnicus DSM 20712 chromosome, complete genomepseudouridine synthase5e-39160
NC_016048:1930089:195945119594511960410960Oscillibacter valericigenes Sjm18-20, complete genomeputative pseudouridine synthase6e-2097.4
NC_014622:4361553:437035743703574371268912Paenibacillus polymyxa SC2 chromosome, complete genomepseudouridine synthase2e-1789.4
NC_014838:175939:176495176495177193699Pantoea sp. At-9b plasmid pPAT9B01, complete sequencepseudouridine synthase4e-1375.1
NC_009615:1734752:174680217468021747476675Parabacteroides distasonis ATCC 8503 chromosome, complete genomeribosomal large subunit pseudouridine synthase D3e-42171
NC_016605:766836:787508787508788323816Pediococcus claussenii ATCC BAA-344 chromosome, complete genomeRluA family pseudouridine synthase7e-1684
NC_008609:1976403:198319419831941983910717Pelobacter propionicus DSM 2379, complete genomepseudouridine synthase6e-2097.4
NC_007512:865500:8975048975048985681065Pelodictyon luteolum DSM 273, complete genomePseudouridine synthase, RluD5e-1064.7
NC_011060:1898224:1902881190288119039301050Pelodictyon phaeoclathratiforme BU-1, complete genomepseudouridine synthase, RluA family3e-1065.1
NC_008781:1973826:1988744198874419897781035Polaromonas naphthalenivorans CJ2, complete genomepseudouridine synthase, RluA family2e-2099.4
NC_019960:801589:809635809635810534900Prevotella dentalis DSM 3688 chromosome 1, complete sequencepseudouridine synthase, RluA family8e-25113
NC_016002:3077648:307764830776483078589942Pseudogulbenkiania sp. NH8B, complete genomeribosomal large subunit pseudouridine synthase C9e-2097.1
NC_016002:1975000:2022391202239120234791089Pseudogulbenkiania sp. NH8B, complete genomeribosomal large subunit pseudouridine synthase D5e-1890.9
NC_018080:5192264:519226451922645193226963Pseudomonas aeruginosa DK2 chromosome, complete genomepseudouridine synthase2e-1995.9
NC_008463:1912348:191380619138061914441636Pseudomonas aeruginosa UCBPP-PA14, complete genomeribosomal large subunit pseudouridine synthase A4e-1788.2
NC_015556:1899850:191389519138951914530636Pseudomonas fulva 12-X chromosome, complete genomepseudouridine synthase4e-1788.2
NC_015556:4118304:411830441183044119278975Pseudomonas fulva 12-X chromosome, complete genomepseudouridine synthase, RluA family2e-1995.9
NC_015410:1144272:116219211621921163175984Pseudomonas mendocina NK-01 chromosome, complete genomeribosomal large subunit pseudouridine synthase D2e-1995.9
NC_009439:1075170:109436910943691095343975Pseudomonas mendocina ymp, complete genomeribosomal large subunit pseudouridine synthase D7e-1994
NC_005773:866157:866157866157867119963Pseudomonas syringae pv. phaseolicola 1448A, complete genomeRibosomal large subunit pseudouridine synthase D(Pseudouridine synthase) (Uracil hydrolyase)5e-21100
NC_005773:1851116:186508118650811865794714Pseudomonas syringae pv. phaseolicola 1448A, complete genomeribosomal large subunit pseudouridine synthase A2e-1789
NC_007005:830467:830467830467831429963Pseudomonas syringae pv. syringae B728a, complete genomePseudouridine synthase, RluD6e-21100
NC_004578:895019:894060894060895022963Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-2099
NC_009524:1488714:149353914935391494309771Psychrobacter sp. PRwf-1 chromosome, complete genomepseudouridine synthase3e-1375.1
NC_017043:1055569:106621410662141067125912Rickettsia montanensis str. OSU 85-930 chromosome, complete genomeribosomal large subunit pseudouridine synthase C2e-1272.8
NC_016915:346000:349673349673350584912Rickettsia rickettsii str. Hlp#2 chromosome, complete genomeribosomal large subunit pseudouridine synthase C1e-1169.7
NC_017066:312000:316035316035316946912Rickettsia typhi str. TH1527 chromosome, complete genomeribosomal large subunit pseudouridine synthase C1e-1376.6
NC_006142:312000:316021316021316932912Rickettsia typhi str. Wilmington, complete genomePseudouridine synthase.1e-1376.6
NC_014833:2225233:224669122466912247605915Ruminococcus albus 7 chromosome, complete genomeRluA family pseudouridine synthase2e-24112
NC_011149:2701916:271898227189822719962981Salmonella enterica subsp. enterica serovar Agona str. SL483,ribosomal large subunit pseudouridine synthase D1e-1789.7
NC_006905:2805877:282278428227842823764981Salmonella enterica subsp. enterica serovar Choleraesuis strpseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA)1e-1789.7
NC_011080:2789744:280807228080722809052981Salmonella enterica subsp. enterica serovar Newport str. SL254,ribosomal large subunit pseudouridine synthase D1e-1789.7
NC_003198:2703013:272142727214272722407981Salmonella enterica subsp. enterica serovar Typhi str. CT18,ftsH suppressor protein SfhB1e-1789.7
NC_013517:300411:322992322992323843852Sebaldella termitidis ATCC 33386, complete genomepseudouridine synthase, RluA family1e-1170.1
NC_014168:1411310:142496314249631425910948Segniliparus rotundus DSM 44985 chromosome, complete genomepseudouridine synthase, RluA family1e-1480.1
NC_020064:1409596:142726314272631427961699Serratia marcescens FGI94, complete genome23S RNA-specific pseudouridylate synthase1e-1376.6
NC_020211:2012480:204614220461422047101960Serratia marcescens WW4, complete genome23S rRNA pseudouridine synthase7e-1994
NC_009901:3317068:333477933347793335696918Shewanella pealeana ATCC 700345, complete genomepseudouridine synthase6e-1477.4
NC_014012:1421979:143208114320811432959879Shewanella violacea DSS12, complete genometRNA pseudouridine synthase C9e-1477
NC_015732:3017387:302073630207363021443708Spirochaeta caldaria DSM 7334 chromosome, complete genomepseudouridine synthase2e-1995.9
NC_007350:1629694:164482916448291645746918Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,putative pseudouridylate synthase2e-1995.5
NC_014623:4535544:456108945610894561898810Stigmatella aurantiaca DW4/3-1 chromosome, complete genomepseudouridine synthase7e-21100
NC_009785:2049395:207462320746232075495873Streptococcus gordonii str. Challis substr. CH1, complete genomeribosomal large subunit pseudouridine synthase D5e-1581.3
NC_010730:180000:192216192216193172957Sulfurihydrogenibium sp. YO3AOP1, complete genomepseudouridine synthase, RluA family5e-1478.2
NC_007575:601256:619142619142619867726Sulfurimonas denitrificans DSM 1251, complete genomepseudouridine synthase4e-1788.2
NC_007513:728324:751333751333751977645Synechococcus sp. CC9902, complete genomeputative pseudouridylate synthase4e-1271.6
NC_007775:723925:745386745386746318933Synechococcus sp. JA-3-3Ab, complete genomepseudouridine synthase, RluA family1e-1893.6
NC_017277:2039097:204081620408162041799984Synechocystis sp. PCC 6803, complete genomehypothetical protein2e-1892.4
NC_007759:2179000:221521822152182216192975Syntrophus aciditrophicus SB, complete genomeribosomal large subunit pseudouridine synthase D1e-1790.1
NC_013921:1344000:136674913667491367666918Thermoanaerobacter italicus Ab9 chromosome, complete genomepseudouridine synthase, RluA family1e-20100
NC_014209:1363151:138671313867131387630918Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,pseudouridine synthase, RluA family1e-20100
NC_010321:1361748:138475413847541385671918Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeRluA family pseudouridine synthase5e-21100
NC_015958:1465631:148911914891191490036918Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeRluA family pseudouridine synthase4e-21101
NC_013894:117644:121943121943122917975Thermocrinis albus DSM 14484 chromosome, complete genomepseudouridine synthase, RluA family3e-1892
NC_011959:972798:997619997619998587969Thermomicrobium roseum DSM 5159, complete genomepseudouridine synthase, RluA family7e-1994
NC_011653:1226035:125539712553971256134738Thermosipho africanus TCF52B, complete genomeribosomal large subunit pseudouridine synthase D4e-1994.7
NC_011653:1226035:122987212298721230753882Thermosipho africanus TCF52B, complete genomeribosomal large subunit pseudouridine synthase C2e-1479
NC_011978:1581994:160696516069651607879915Thermotoga neapolitana DSM 4359, complete genomePseudouridine synthase4e-1478.2
NC_011901:1122357:114356511435651144272708Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completetRNA pseudouridine synthase C4e-1271.6
NC_015714:238891:238891238891239541651Treponema paraluiscuniculi Cuniculi A chromosome, complete genomepseudouridylate synthase5e-1064.7
NC_010503:327517:356961356961357839879Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, completepseudouridylate synthase, 23S RNA-specific7e-2097.4
NC_002162:138334:144136144136145083948Ureaplasma parvum serovar 3 str. ATCC 700970, complete genomepseudouridine synthase (uracil hydrolase)1e-1377
NC_002162:333303:356922356922357821900Ureaplasma parvum serovar 3 str. ATCC 700970, complete genomepseudouridine synthase (uracil hydrolase)6e-2097.4
NC_013520:1860286:187477318747731875639867Veillonella parvula DSM 2008, complete genomepseudouridine synthase, RluA family3e-1582
NC_013520:1860286:1861671186167118627891119Veillonella parvula DSM 2008, complete genomepseudouridine synthase3e-0755.5
NC_011184:597496:600470600470601444975Vibrio fischeri MJ11 chromosome I, complete sequenceribosomal large subunit pseudouridine synthase D2e-1995.9
NC_013722:1905655:190565519056551906647993Xanthomonas albilineans, complete genomeprobable pseudouridine synthase (rna-uridine isomerase) (rna pseudouridylate synthase) protein6e-1374.3
NC_017271:2449504:247192524719252472869945Xanthomonas campestris pv. raphani 756C chromosome, completeribosomal large subunit pseudouridine synthase C6e-1064.3
NC_015224:1914833:192806319280631928761699Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative ribosomal large subunit pseudouridine synthase6e-1580.9
NC_017168:561402:573450573450574070621Yersinia pestis A1122 chromosome, complete genomeribosomal large subunit pseudouridine synthase A2e-1789
NC_010159:770172:782213782213782833621Yersinia pestis Angola, complete genomeribosomal large subunit pseudouridine synthase A2e-1789
NC_008150:4601202:460802246080224608642621Yersinia pestis Antiqua, complete genomeribosomal large subunit pseudouridine synthase A2e-1789
NC_017265:3861259:386726838672683867888621Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Ribosomal large subunit pseudouridine synthase A2e-1789
NC_005810:4183297:419534541953454195965621Yersinia pestis biovar Microtus str. 91001, complete genomeribosomal large subunit pseudouridine synthase A2e-1789
NC_003143:524755:529785529785530405621Yersinia pestis CO92, complete genomeribosomal large subunit pseudouridine synthase A2e-1789
NC_017154:520400:525430525430526050621Yersinia pestis D106004 chromosome, complete genomeribosomal large subunit pseudouridine synthase A2e-1789
NC_017160:520799:527619527619528239621Yersinia pestis D182038 chromosome, complete genomeribosomal large subunit pseudouridine synthase A2e-1789
NC_004088:4073698:408819840881984088818621Yersinia pestis KIM, complete genomehypothetical protein2e-1789
NC_008149:442168:448988448988449608621Yersinia pestis Nepal516, complete genomeribosomal large subunit pseudouridine synthase A2e-1789
NC_009381:3558018:357006635700663570686621Yersinia pestis Pestoides F chromosome, complete genomeribosomal large subunit pseudouridine synthase A2e-1789
NC_014029:576459:583279583279583899621Yersinia pestis Z176003 chromosome, complete genomeribosomal large subunit pseudouridine synthase A2e-1789
NC_009708:3862044:387654438765443877164621Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeribosomal large subunit pseudouridine synthase A2e-1789
NC_006155:751235:756284756284756904621Yersinia pseudotuberculosis IP 32953, complete genome23S rRNA pseudouridylate 746 synthase2e-1789
NC_010634:732016:738044738044738664621Yersinia pseudotuberculosis PB1/+, complete genomepseudouridine synthase2e-1789
NC_010465:3919572:393162039316203932240621Yersinia pseudotuberculosis YPIII, complete genomepseudouridine synthase2e-1789
NC_017262:623351:624595624595625548954Zymomonas mobilis subsp. mobilis ATCC 10988 chromosome, completeRluA family pseudouridine synthase4e-1994.7