Pre_GI: BLASTP Hits

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Query: NC_009089:4140764:4141598 Clostridium difficile 630, complete genome

Start: 4141598, End: 4142344, Length: 747

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013316:4018451:402001240200124020758747Clostridium difficile R20291, complete genomehypothetical protein2e-130465
NC_014624:140000:155728155728156519792Eubacterium limosum KIST612 chromosome, complete genomeputative O-methyltransferase4e-55214
NC_015687:303810:359625359625360359735Clostridium acetobutylicum DSM 1731 chromosome, complete genomeSAM-dependent methyltransferase3e-54211
NC_003030:303812:359629359629360363735Clostridium acetobutylicum ATCC 824, complete genomeSAM-dependent methyltransferase3e-54211
NC_015275:1:223492234923110762Clostridium lentocellum DSM 5427 chromosome, complete genomemethyltransferase small5e-51201
NC_004193:35698:428514285143591741Oceanobacillus iheyensis HTE831, complete genomehypothetical protein2e-50199
NC_011567:1:389913899139725735Anoxybacillus flavithermus WK1, complete genomeMethyltransferase (UbiE/COQ5 family)2e-50199
NC_014171:1:391823918239922741Bacillus thuringiensis BMB171 chromosome, complete genomemethyltransferase3e-50198
NC_017208:1:387353873539475741Bacillus thuringiensis serovar chinensis CT-43 chromosome, completemethyltransferase6e-50197
NC_012673:1650139:165125116512511651988738Exiguobacterium sp. AT1b, complete genomemethyltransferase small5e-47187
NC_011900:1451545:145407114540711454820750Streptococcus pneumoniae ATCC 700669, complete genomehypothetical protein5e-42171
NC_012121:113912:131700131700132491792Staphylococcus carnosus subsp. carnosus TM300, complete genomeconserved hypothetical protein with SAM binding motif2e-38159
NC_014632:567289:582801582801583475675Ilyobacter polytropus DSM 2926 chromosome, complete genomemethyltransferase small3e-36152
NC_014654:391201:405240405240405965726Halanaerobium sp. 'sapolanicus' chromosome, complete genomemethyltransferase small6e-36150
NC_006055:769418:784976784976785698723Mesoplasma florum L1, complete genomeS-adenosylmethionine:2-demethylmenaquinone methyltransferase1e-30133
NC_015711:2050360:206673220667322067514783Myxococcus fulvus HW-1 chromosome, complete genomehypothetical protein2e-25115
NC_002162:333303:350065350065350832768Ureaplasma parvum serovar 3 str. ATCC 700970, complete genomehypothetical protein2e-2099.8
NC_011025:183287:207516207516208307792Mycoplasma arthritidis 158L3-1, complete genomepredicted O-methyltransferase1e-1893.6
NC_014448:414784:431132431132431905774Mycoplasma hyorhinis HUB-1 chromosome, complete genomeMethyltransferase small domain protein2e-1892.8
NC_013939:1902397:190761519076151908310696Deferribacter desulfuricans SSM1, complete genomeSAM-dependent methyltransferase8e-1787.4
NC_008095:5062491:507802850780285078477450Myxococcus xanthus DK 1622, complete genomehypothetical protein7e-1374.3
NC_010003:1360472:140869514086951409393699Petrotoga mobilis SJ95, complete genomemethyltransferase small5e-1271.6
NC_016751:1299738:131845513184551319141687Marinitoga piezophila KA3 chromosome, complete genomeO-methyltransferase3e-1168.9
NC_008787:437786:452759452759453460702Campylobacter jejuni subsp. jejuni 81-176, complete genomehypothetical protein9e-0960.8
NC_017280:435347:450319450319451020702Campylobacter jejuni subsp. jejuni M1 chromosome, complete genomehypothetical protein1e-0860.5
NC_012115:1122905:112330311233031123986684Nautilia profundicola AmH, complete genomemethyltransferase small2e-0859.7
NC_014802:441000:455422455422456123702Campylobacter jejuni subsp. jejuni ICDCCJ07001 chromosome, completehypothetical protein6e-0858.2
NC_014774:171500:172642172642173430789Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completemethyltransferase protein1e-0653.5