Pre_GI: BLASTP Hits

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Query: NC_009089:1093832:1098285 Clostridium difficile 630, complete genome

Start: 1098285, End: 1099187, Length: 903

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009089:1093832:10873831087383114439857016Clostridium difficile 630, complete genome1e-164578
NC_021182:4367736:438014943801494381105957Clostridium pasteurianum BC1, complete genomephage recombination protein Bet6e-49194
NC_014393:4323368:433401543340154334983969Clostridium cellulovorans 743B chromosome, complete genomephage recombination protein Bet6e-49194
NC_009633:2592000:262710126271012627895795Alkaliphilus metalliredigens QYMF chromosome, complete genomephage recombination protein Bet7e-46184
NC_019977:1189242:119715311971531198037885Methanomethylovorans hollandica DSM 15978, complete genomephage recombination protein Bet7e-46184
NC_003212:1248000:125403712540371254819783Listeria innocua Clip11262, complete genomehypothetical protein1e-42173
NC_014721:2135500:2145653214565321467951143Caldicellulosiruptor kristjanssonii 177R1B chromosome, completephage recombination protein bet6e-38158
NC_012034:2555447:2565309256530925664421134Anaerocellum thermophilum DSM 6725, complete genomephage recombination protein Bet1e-37156
NC_014652:420457:4694694694694705991131Caldicellulosiruptor hydrothermalis 108 chromosome, completephage recombination protein bet2e-37155
NC_013170:311045:339395339395340069675Cryptobacterium curtum DSM 15641, complete genomephage recombination protein Bet7e-36150
NC_015558:1389369:140364814036481404418771Streptococcus parauberis KCTC 11537 chromosome, complete genomephage recombination protein Bet2e-34146
NC_009332:653474:660461660461661237777Streptococcus pyogenes str. Manfredo chromosome, complete genomeRecT family phage protein3e-28125
NC_002737:780857:788239788239789030792Streptococcus pyogenes M1 GAS, complete genomehypothetical protein6e-28124
NC_008021:779380:787172787172787963792Streptococcus pyogenes MGAS9429, complete genomephage protein, RecT family6e-28124
NC_020126:2883194:2894497289449728955191023Myxococcus stipitatus DSM 14675, complete genomephage recombination protein Bet1e-1687.4
NC_014364:2693840:269745326974532698319867Spirochaeta smaragdinae DSM 11293 chromosome, complete genomephage recombination protein Bet5e-1272
NC_014364:2111685:213066121306612131533873Spirochaeta smaragdinae DSM 11293 chromosome, complete genomephage recombination protein Bet1e-1170.9