Pre_GI: BLASTP Hits

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Query: NC_008781:2925818:2943607 Polaromonas naphthalenivorans CJ2, complete genome

Start: 2943607, End: 2943921, Length: 315

Host Lineage: Polaromonas naphthalenivorans; Polaromonas; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Naphthalene-degrading bacterium. Polaromonas naphthalenivorans was isolated from naphthalene-contaminated, freshwater sediment. This organism is capable of aerobic degradation of naphthalene at temperatures of less than 20 degrees C. Naphthalene is a polycyclic aromatic hydrocarbon (PAH). PAHs can be toxic and/or carcinogenic, therefore PAH contamination is of considerable concern.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015942:355944:374241374241374750510Acidithiobacillus ferrivorans SS3 chromosome, complete genomehistone family protein DNA-binding protein7e-1475.9
NC_011992:1234610:124592112459211246193273Acidovorax ebreus TPSY, complete genomehistone family protein DNA-binding protein3e-0753.9
NC_008782:2781229:279335227933522793624273Acidovorax sp. JS42, complete genomehistone family protein DNA-binding protein3e-0753.9
NC_008570:2216736:221933122193312219603273Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeDNA-binding protein HU-beta1e-0651.6
NC_015422:1694363:171325817132581713530273Alicycliphilus denitrificans K601 chromosome, complete genomehistone family protein DNA-binding protein1e-0858.2
NC_009633:168266:184646184646184924279Alkaliphilus metalliredigens QYMF chromosome, complete genomehistone family protein DNA-binding protein3e-0960.5
NC_009922:2850320:286144528614452861723279Alkaliphilus oremlandii OhILAs, complete genomehistone family protein DNA-binding protein2e-0754.7
NC_013862:27991:106151061510902288Allochromatium vinosum DSM 180 plasmid pALVIN02, complete sequenceintegration host factor, beta subunit3e-1477
NC_012034:2623252:263621926362192636497279Anaerocellum thermophilum DSM 6725, complete genomehistone family protein DNA-binding protein6e-1062.8
NC_008702:1153344:115712611571261157410285Azoarcus sp. BH72, complete genomeprobable integration host factor, beta-subunit1e-24111
NC_021150:1564229:156422915642291564507279Azotobacter vinelandii CA6, complete genomeintegration host factor subunit beta3e-1787
NC_017190:2130651:222540922254092225684276Bacillus amyloliquefaciens LL3 chromosome, complete genomeSPBc2 prophage-derived DNA-binding protein HU 23e-0753.9
NC_011773:3547507:356972435697243569996273Bacillus cereus AH820 chromosome, complete genomeDNA-binding protein HU4e-0960.1
NC_003909:3483244:350545735054573505729273Bacillus cereus ATCC 10987, complete genomeDNA-binding protein HU4e-0960.1
NC_011725:1486635:149603414960341496306273Bacillus cereus B4264 chromosome, complete genomeDNA-binding protein HU5e-1166.2
NC_000964:2146000:222453322245332224811279Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein5e-0960.1
NC_011833:31192:353093530935587279Buchnera aphidicola str. 5A (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha2e-0754.7
NC_017256:30192:353573535735629273Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) chromosome,DNA-binding protein HU-alpha4e-0753.5
NC_002528:31191:353083530835586279Buchnera aphidicola str. APS (Acyrthosiphon pisum), completeDNA-binding protein hu-alpha3e-0753.9
NC_017254:31206:353233532335601279Buchnera aphidicola str. JF98 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha3e-0753.9
NC_017253:31192:353093530935587279Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha3e-0753.9
NC_017255:31211:353283532835606279Buchnera aphidicola str. LL01 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha3e-0753.9
NC_017252:31215:353313533135609279Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha3e-0753.9
NC_011834:31206:353233532335601279Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum) chromosome,DNA-binding protein hu-alpha3e-0753.9
NC_014539:1839840:184259318425931842865273Burkholderia sp. CCGE1003 chromosome 1, complete sequencehistone family protein DNA-binding protein2e-0754.3
NC_009254:74000:792917929179569279Burkholderia vietnamiensis G4 chromosome 3, complete sequencehistone family protein DNA-binding protein1e-0651.6
NC_014652:379833:398080398080398358279Caldicellulosiruptor hydrothermalis 108 chromosome, completehistone family protein DNA-binding protein7e-1062.4
NC_009437:1556934:156381915638191564106288Caldicellulosiruptor saccharolyticus DSM 8903, complete genomehistone family protein DNA-binding protein2e-1167.8
NC_010995:2312901:231914623191462319418273Cellvibrio japonicus Ueda107, complete genomeDNA-binding protein HU superfamily3e-0650.8
NC_002932:296557:307146307146307451306Chlorobium tepidum TLS, complete genomeDNA-binding protein HU-alpha, putative2e-1064.7
NC_009698:3647955:365023136502313650509279Clostridium botulinum A str. Hall chromosome, complete genomeDNA-binding protein HU6e-0856.2
NC_010516:3845942:384813938481393848417279Clostridium botulinum B1 str. Okra, complete genomeDNA-binding protein HU6e-0856.2
NC_010723:173280:174948174948175226279Clostridium botulinum E3 str. Alaska E43, complete genomeDNA-binding protein HU2e-0857.8
NC_011898:2907017:292558029255802925855276Clostridium cellulolyticum H10, complete genomehistone family protein DNA-binding protein3e-0857
NC_008262:2649289:270117027011702701445276Clostridium perfringens SM101, complete genomeDNA-binding protein HU6e-1062.8
NC_020291:117983:126830126830127105276Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeDNA-binding protein HU5e-0856.6
NC_014614:356746:394283394283394591309Clostridium sticklandii, complete genomeHU, DNA-binding transcriptional regulator, beta subunit9e-0752.4
NC_013446:1889500:189372218937221893994273Comamonas testosteroni CNB-2, complete genomehistone-like DNA-binding protein3e-0857.4
NC_007298:1418500:144395014439501444291342Dechloromonas aromatica RCB, complete genomeIntegration host factor, alpha subunit4e-0650.1
NC_007298:1759881:178333917833391783623285Dechloromonas aromatica RCB, complete genomeHistone-like bacterial DNA-binding protein2e-1478.2
NC_007298:1759881:177516617751661775387222Dechloromonas aromatica RCB, complete genomeHistone-like bacterial DNA-binding protein4e-1270.1
NC_013939:1417750:143906514390651439358294Deferribacter desulfuricans SSM1, complete genomeintegration host factor, subunit beta1e-1478.2
NC_012108:2159230:216869321686932168923231Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein2e-0961.2
NC_014972:3604534:361615136161513616432282Desulfobulbus propionicus DSM 2032 chromosome, complete genomehistone family protein DNA-binding protein3e-1167.4
NC_015589:2555000:256458325645832564867285Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehistone family protein DNA-binding protein2e-1167.8
NC_016629:2971860:298610929861092986384276Desulfovibrio africanus str. Walvis Bay chromosome, completehistone family protein DNA-binding protein1e-1065.1
NC_016629:3396500:342726034272603427532273Desulfovibrio africanus str. Walvis Bay chromosome, completehistone family protein DNA-binding protein1e-0962
NC_007519:3326918:333138833313883331675288Desulfovibrio alaskensis G20 chromosome, complete genomehistone-like DNA-binding protein2e-0650.8
NC_012796:4075583:410928941092894109567279Desulfovibrio magneticus RS-1, complete genomeHU_IHF family transcriptional regulator5e-0856.6
NC_012796:3267569:327755532775553277833279Desulfovibrio magneticus RS-1, complete genomeHU_IHF family transcriptional regulator1e-0755.5
NC_020409:560278:568779568779569054276Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeIntegration host factor subunit beta1e-0962
NC_002937:1915787:193133319313331931614282Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeDNA-binding protein HU, beta subunit, putative6e-1062.8
NC_007946:3683371:370576937057693706041273Escherichia coli UTI89, complete genomeDNA-binding protein HU-alpha (HU-2)3e-0650.4
NC_016510:4343:102691026910577309Flavobacterium columnare ATCC 49512 chromosome, complete genomehistone-like DNA-binding protein HU-alpha1e-0755.5
NC_008601:1094041:111318411131841113456273Francisella tularensis subsp. novicida U112, complete genomeDNA-binding protein HU-beta4e-0753.5
NC_009257:1023696:104281710428171043089273Francisella tularensis subsp. tularensis WY96-3418 chromosome,DNA-binding protein HU-beta2e-0650.8
NC_014394:1626699:163382516338251634106282Gallionella capsiferriformans ES-2 chromosome, complete genomehistone family protein DNA-binding protein2e-0650.8
NC_014394:2111985:211605621160562116349294Gallionella capsiferriformans ES-2 chromosome, complete genomeintegration host factor, beta subunit7e-23105
NC_014394:1594071:161351816135181613811294Gallionella capsiferriformans ES-2 chromosome, complete genomeintegration host factor, beta subunit2e-23107
NC_011146:3720658:374570537457053745986282Geobacter bemidjiensis Bem, complete genomehistone family protein DNA-binding protein8e-1682.4
NC_007517:1561466:158627615862761586551276Geobacter metallireducens GS-15, complete genomeHistone-like DNA-binding protein9e-0648.9
NC_007517:1792000:180801818080181808308291Geobacter metallireducens GS-15, complete genomeHistone-like DNA-binding protein2e-1064.7
NC_011979:3045952:305677330567733057048276Geobacter sp. FRC-32, complete genomehistone family protein DNA-binding protein6e-1579.3
NC_012918:1174412:117713711771371177418282Geobacter sp. M21 chromosome, complete genomehistone family protein DNA-binding protein8e-1682.4
NC_002939:2844240:286990028699002870190291Geobacter sulfurreducens PCA, complete genomeDNA-binding protein HU9e-1682
NC_002939:1634843:166893316689331669208276Geobacter sulfurreducens PCA, complete genomeintegration host factor, alpha subunit5e-0649.7
NC_009483:3024115:304724230472423047520279Geobacter uraniireducens Rf4 chromosome, complete genomehistone family protein DNA-binding protein2e-0754.7
NC_009483:2201986:222274022227402223015276Geobacter uraniireducens Rf4 chromosome, complete genomehistone family protein DNA-binding protein1e-1065.5
NC_009483:2489000:250032325003232500598276Geobacter uraniireducens Rf4 chromosome, complete genomehistone family protein DNA-binding protein2e-1478.2
NC_016631:5378810:539409553940955394448354Granulicella mallensis MP5ACTX8 chromosome, complete genomehistone family protein DNA-binding protein1e-1272
NC_007645:2204066:221540322154032215675273Hahella chejuensis KCTC 2396, complete genomeBacterial nucleoid DNA-binding protein6e-0752.8
NC_007645:4677965:469218546921854692487303Hahella chejuensis KCTC 2396, complete genomeintegration host factor, alpha subunit4e-0753.1
NC_014532:3596097:360212336021233602398276Halomonas elongata DSM 2581, complete genomeK03530 DNA-binding protein HU-beta5e-0959.7
NC_013166:1841446:185437918543791854681303Kangiella koreensis DSM 16069, complete genomeintegration host factor, alpha subunit3e-0650.8
NC_009664:4423829:464649646464964647053558Kineococcus radiotolerans SRS30216, complete genomehistone family protein DNA-binding protein2e-0651.2
NC_007930:50801:564885648856763276Lactobacillus salivarius subsp. salivarius UCC118 plasmid pMP118,DNA-binding protein HU3e-1167.4
NC_019907:1411124:141570214157021416001300Liberibacter crescens BT-1 chromosome, complete genomeintegration host factor subunit beta3e-0960.5
NC_017506:1100679:110742411074241107726303Marinobacter adhaerens HP15 chromosome, complete genomeintegration host factor subunit alpha3e-0650.4
NC_011757:97281:115544115544115852309Methylobacterium chloromethanicum CM4, complete genomeintegration host factor, beta subunit1e-1375.1
NC_012988:32996:557525575256060309Methylobacterium extorquens DM4, complete genomeintegration host factor1e-1375.1
NC_010514:6000:264522645226778327Methylobacterium radiotolerans JCM 2831 plasmid pMRAD03, completehistone family protein DNA-binding protein6e-1269.3
NC_010511:1122529:112672511267251127033309Methylobacterium sp. 4-46 chromosome, complete genomehistone family protein DNA-binding protein6e-0856.2
NC_010511:3674178:373084737308473731155309Methylobacterium sp. 4-46 chromosome, complete genomehistone family protein DNA-binding protein2e-0650.8
NC_020126:5777895:577995457799545780325372Myxococcus stipitatus DSM 14675, complete genomeintegration host factor subunit beta5e-1372.8
NC_020126:8080574:808535780853578085707351Myxococcus stipitatus DSM 14675, complete genomeintegration host factor subunit beta2e-0858.2
NC_008095:4189082:419269841926984193087390Myxococcus xanthus DK 1622, complete genomeintegration host factor, alpha subunit6e-0752.8
NC_008095:4061899:408187440818744082257384Myxococcus xanthus DK 1622, complete genomeintegration host factor, beta subunit3e-1167
NC_007484:1975322:199732119973211997593273Nitrosococcus oceani ATCC 19707, complete genomeHistone-like DNA-binding protein5e-1063.2
NC_008344:669498:669498669498669770273Nitrosomonas eutropha C91, complete genomehistone family protein DNA-binding protein1e-0755.1
NC_014483:39729:512505125051522273Paenibacillus polymyxa E681 chromosome, complete genomeDNA-binding protein HU (DNA-binding protein II)2e-1064.3
NC_016641:1639356:164996216499621650234273Paenibacillus terrae HPL-003 chromosome, complete genomeDNA-binding protein hu-alpha2e-1064.3
NC_007498:1666242:167333016733301673611282Pelobacter carbinolicus DSM 2380, complete genomeintegration host factor, alpha subunit1e-0755.1
NC_008609:1976403:204043820404382040710273Pelobacter propionicus DSM 2379, complete genomehistone family protein DNA-binding protein1e-1168.6
NC_008609:1976403:201336020133602013644285Pelobacter propionicus DSM 2379, complete genomehistone family protein DNA-binding protein2e-0650.8
NC_008609:2446246:248416824841682484461294Pelobacter propionicus DSM 2379, complete genomehistone family protein DNA-binding protein9e-0855.5
NC_008609:142471:182937182937183212276Pelobacter propionicus DSM 2379, complete genomehistone family protein DNA-binding protein7e-0855.8
NC_007948:1574881:160283616028361603147312Polaromonas sp. JS666, complete genomehistone-like DNA-binding protein4e-0650.1
NC_015571:411156:429426429426429692267Porphyromonas gingivalis TDC60, complete genomeDNA-binding protein HU4e-0753.1
NC_018080:1834754:184312018431201843404285Pseudomonas aeruginosa DK2 chromosome, complete genomeintegration host factor subunit beta2e-1787.8
NC_011770:2046490:205485620548562055140285Pseudomonas aeruginosa LESB58, complete genomeintegration host factor beta subunit2e-1787.8
NC_009656:1994392:200277320027732003057285Pseudomonas aeruginosa PA7 chromosome, complete genomeintegration host factor subunit beta2e-1787.8
NC_008463:2017607:202597320259732026257285Pseudomonas aeruginosa UCBPP-PA14, complete genomeintegration host factor beta subunit2e-1787.8
NC_015379:1887275:189486818948681895164297Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, unclassified2e-1787.8
NC_008027:1559083:156937315693731569669297Pseudomonas entomophila L48, complete genomeintegration host factor (IHF),beta subunit, site specific recombination1e-1684.7
NC_016830:1901488:190914419091441909440297Pseudomonas fluorescens F113 chromosome, complete genomeprotein IhfB2e-1787.8
NC_007492:4563981:458471745847174585013297Pseudomonas fluorescens PfO-1, complete genomeIntegration host factor, beta subunit8e-1785.5
NC_012660:1804610:181322818132281813524297Pseudomonas fluorescens SBW25 chromosome, complete genomeintegration host factor subunit beta9e-1785.5
NC_015410:2144387:215171921517192152003285Pseudomonas mendocina NK-01 chromosome, complete genomeintegration host factor subunit beta3e-1787
NC_009439:2038303:204573520457352046022288Pseudomonas mendocina ymp, complete genomeintegration host factor subunit beta3e-1787.4
NC_020209:997385:100490410049041005200297Pseudomonas poae RE*1-1-14, complete genomeintegration host factor subunit beta8e-1785.5
NC_010322:1520973:152683615268361527132297Pseudomonas putida GB-1 chromosome, complete genomeintegration host factor subunit beta8e-1785.5
NC_015733:1555476:156068915606891560988300Pseudomonas putida S16 chromosome, complete genomeintegration host factor subunit beta9e-1785.5
NC_009380:4729340:473195847319584732233276Salinispora tropica CNB-440 chromosome, complete genomehistone family protein DNA-binding protein1e-0858.5
NC_016632:1138000:115011011501101150394285Serratia symbiotica str. 'Cinara cedri' chromosome, completeintegration host factor beta-subunit1e-1478.6
NC_016632:1049510:106168310616831061955273Serratia symbiotica str. 'Cinara cedri' chromosome, completehistone family protein DNA-binding protein4e-0753.5
NC_018868:569423:571431571431571727297Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeintegration host factor subunit beta4e-1890.1
NC_014623:4999032:500264050026405003044405Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeintegration host factor subunit alpha6e-0752.8
NC_002737:1207880:122263712226371222912276Streptococcus pyogenes M1 GAS, complete genomehistone-like DNA-binding protein1e-0652
NC_009332:653474:654160654160654435276Streptococcus pyogenes str. Manfredo chromosome, complete genomeDNA-binding protein HU1e-0652
NC_012997:1446037:144955514495551449851297Teredinibacter turnerae T7901, complete genomeintegration host factor, beta subunit2e-1890.5
NC_014152:191200:195060195060195332273Thermincola sp. JR, complete genomehistone family protein DNA-binding protein8e-0958.9
NC_015499:119200:137696137696138016321Thermodesulfobium narugense DSM 14796 chromosome, complete genomehistone family protein DNA-binding protein1e-1064.7
NC_016148:1175999:117808711780871178362276Thermovirga lienii DSM 17291 chromosome, complete genomehistone family protein DNA-binding protein2e-0857.4
NC_016445:2663837:270243927024392702711273Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeDNA-binding protein HU8e-0649.3
NC_007086:1988000:199247519924751992774300Xanthomonas campestris pv. campestris str. 8004, complete genomeintegration host factor alpha subunit8e-0752.4
NC_003902:2903493:291844529184452918744300Xanthomonas campestris pv. campestris str. ATCC 33913, completeintegration host factor subunit alpha8e-0752.4
NC_017271:2906000:292097929209792921278300Xanthomonas campestris pv. raphani 756C chromosome, completeintegration host factor subunit alpha8e-0752.4
NC_002488:1099975:114255611425561142840285Xylella fastidiosa 9a5c, complete genomehistone-like protein7e-0855.8