Pre_GI: BLASTP Hits

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Query: NC_008593:2020473:2027200 Clostridium novyi NT, complete genome

Start: 2027200, End: 2027766, Length: 567

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015425:2277570:227840122784012278979579Clostridium botulinum BKT015925 chromosome, complete genomehypothetical protein3e-85314
NC_011837:1056888:107887110788711079440570Clostridium kluyveri NBRC 12016, complete genomehypothetical protein9e-68256
NC_016584:593954:593954593954594529576Desulfosporosinus orientis DSM 765 chromosome, complete genomeS-adenosylmethionine-dependent methyltransferase1e-62238
NC_018704:896209:904545904545905126582Amphibacillus xylanus NBRC 15112, complete genomehypothetical protein4e-46184
NC_009725:2859630:288891228889122889493582Bacillus amyloliquefaciens FZB42, complete genomeYtqB3e-45181
NC_020134:1173000:118976711897671190330564Clostridium stercorarium subsp. stercorarium DSM 8532, completeputative rRNA methylase6e-45180
NC_008525:664500:684323684323684886564Pediococcus pentosaceus ATCC 25745, complete genomeSAM-dependent methyltransferase1e-42172
NC_004193:2342528:235989023598902360465576Oceanobacillus iheyensis HTE831, complete genomehypothetical protein3e-42171
NC_019978:224619:235571235571236143573Halobacteroides halobius DSM 5150, complete genomeputative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis5e-41167
NC_006448:1451729:145927014592701459818549Streptococcus thermophilus LMG 18311, complete genomerRNA methylase (SAM-dependent methyltransferase superfamily), putative2e-40165
NC_016941:1774000:179087517908751791438564Staphylococcus aureus subsp. aureus MSHR1132, complete genomeputative rRNA methylase2e-39161
NC_020164:1037979:103797910379791038542564Staphylococcus warneri SG1, complete genomehypothetical protein3e-39160
NC_016605:1177485:118087211808721181429558Pediococcus claussenii ATCC BAA-344 chromosome, complete genomeputative rRNA methylase5e-39160
NC_015291:665714:682961682961683518558Streptococcus oralis Uo5, complete genomehypothetical protein2e-38158
NC_002952:1917999:193636919363691936932564Staphylococcus aureus subsp. aureus MRSA252, complete genomehypothetical protein2e-37155
NC_007168:1167454:116689711668971167457561Staphylococcus haemolyticus JCSC1435, complete genomehypothetical protein2e-37154
NC_009487:1925645:194424719442471944810564Staphylococcus aureus subsp. aureus JH9 chromosome, completehypothetical protein6e-37153
NC_002745:1804000:182112518211251821688564Staphylococcus aureus subsp. aureus N315, complete genomehypothetical protein6e-37153
NC_007795:1774725:179376417937641794327564Staphylococcus aureus subsp. aureus NCTC 8325, complete genomehypothetical protein6e-37153
NC_002953:1819411:183826818382681838831564Staphylococcus aureus subsp. aureus MSSA476, complete genomehypothetical protein6e-37153
NC_002951:1848684:186776218677621868325564Staphylococcus aureus subsp. aureus COL, complete genomehypothetical protein6e-37153
NC_010079:1871915:189082318908231891386564Staphylococcus aureus subsp. aureus USA300_TCH1516, completehypothetical protein6e-37153
NC_003923:1841500:185893218589321859495564Staphylococcus aureus subsp. aureus MW2, complete genomehypothetical protein6e-37153
NC_007793:1871165:189007318900731890636564Staphylococcus aureus subsp. aureus USA300, complete genomehypothetical protein6e-37153
NC_002758:1880323:189891918989191899482564Staphylococcus aureus subsp. aureus Mu50, complete genomesimilar to SAM-dependent methyltransferase6e-37153
NC_009782:1881722:190031819003181900881564Staphylococcus aureus subsp. aureus Mu3, complete genomehypothetical protein6e-37153
NC_009632:1927372:194412119441211944684564Staphylococcus aureus subsp. aureus JH1 chromosome, completehypothetical protein6e-37153
NC_009641:1833000:185060318506031851166564Staphylococcus aureus subsp. aureus str. Newman chromosome,hypothetical protein6e-37153
NC_016928:1843597:186242918624291862992564Staphylococcus aureus subsp. aureus M013 chromosome, completeSAM-dependent methyltransferase, MraW methylasefamily5e-37153
NC_007622:1751500:176793117679311768494564Staphylococcus aureus RF122, complete genomehypothetical protein6e-37153
NC_017351:1869287:188765018876501888213564Staphylococcus aureus subsp. aureus 11819-97 chromosome, completeputative rRNA methylase6e-37153
NC_017347:1852500:186999818699981870561564Staphylococcus aureus subsp. aureus T0131 chromosome, completerRNA methyltransferase6e-37153
NC_017343:1748620:176733617673361767899564Staphylococcus aureus subsp. aureus ECT-R 2, complete genomerRNA methylase family protein6e-37153
NC_017341:1851972:187084318708431871406564Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,putative rRNA methylase6e-37153
NC_017338:1830790:184753918475391848102564Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeputative rRNA methylase6e-37153
NC_017337:1829840:184848518484851849048564Staphylococcus aureus subsp. aureus ED133 chromosome, completehypothetical protein6e-37153
NC_016912:1732354:175139317513931751956564Staphylococcus aureus subsp. aureus VC40 chromosome, completehypothetical protein6e-37153
NC_013450:1825010:184372618437261844289564Staphylococcus aureus subsp. aureus ED98, complete genomehypothetical protein6e-37153
NC_017342:1462297:146173714617371462300564Staphylococcus aureus subsp. aureus TCH60 chromosome, completerRNA methyltransferase1e-36152
NC_004461:1465397:148645114864511487014564Staphylococcus epidermidis ATCC 12228, complete genomehypothetical protein6e-36150
NC_002976:1361364:138241813824181382981564Staphylococcus epidermidis RP62A, complete genomehypothetical protein1e-35149
NC_013171:228356:246324246324246869546Anaerococcus prevotii DSM 20548, complete genomeputative rRNA methylase4e-34144
NC_008011:213386:247238247238247885648Lawsonia intracellularis PHE/MN1-00, complete genomeSAM-dependent methyltransferases1e-2099.4