Pre_GI: BLASTP Hits

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Query: NC_008593:196257:203395 Clostridium novyi NT, complete genome

Start: 203395, End: 203919, Length: 525

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015425:198315:208071208071208586516Clostridium botulinum BKT015925 chromosome, complete genomehypothetical protein2e-68257
NC_015687:3326461:333256033325603333087528Clostridium acetobutylicum DSM 1731 chromosome, complete genomehypothetical protein1e-48192
NC_003030:3324834:333093333309333331460528Clostridium acetobutylicum ATCC 824, complete genomeUncharacterized conserved protein, containing ClpE-like Zn-zinger domain; YACH B.subtilis ortholog1e-48192
NC_021182:4602683:460887346088734609397525Clostridium pasteurianum BC1, complete genomehypothetical protein6e-47186
NC_014328:4471995:447696144769614477509549Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative UvrB/UvrC domain-containing protein1e-41169
NC_011837:165913:181829181829182395567Clostridium kluyveri NBRC 12016, complete genomehypothetical protein7e-41166
NC_009706:165913:181847181847182395549Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein6e-41166
NC_012563:4004709:400967240096724010199528Clostridium botulinum A2 str. Kyoto, complete genomeUVR domain protein2e-40165
NC_010520:3837378:384234238423423842869528Clostridium botulinum A3 str. Loch Maree, complete genomeUVR domain protein2e-40164
NC_012658:3827500:383246938324693832996528Clostridium botulinum Ba4 str. 657 chromosome, complete genomeUVR domain-containing protein4e-40164
NC_010516:3807780:381274438127443813271528Clostridium botulinum B1 str. Okra, complete genomeUVR domain protein1e-39162
NC_009495:3735703:374174637417463742273528Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeUVR domain protein1e-39162
NC_009697:3711692:371773537177353718262528Clostridium botulinum A str. ATCC 19397 chromosome, completeUVR domain-containing protein1e-39162
NC_009698:3609881:361484436148443615371528Clostridium botulinum A str. Hall chromosome, complete genomeUVR domain-containing protein1e-39162
NC_009699:3839575:384453938445393845066528Clostridium botulinum F str. Langeland chromosome, complete genomeUVR domain-containing protein1e-39162
NC_017297:3838189:384315338431533843680528Clostridium botulinum F str. 230613 chromosome, complete genomeUVR domain protein1e-39162
NC_004557:2777291:278316727831672783685519Clostridium tetani E88, complete genomeputative clpC ATPase1e-36152
NC_015913:1491393:152834615283461528879534Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomehypothetical protein2e-31135
NC_019970:336472:347392347392347919528Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeuncharacterized protein with conserved CXXC pairs1e-29129
NC_011899:86800:102658102658103170513Halothermothrix orenii H 168, complete genomeUvrB/UvrC protein1e-27122
NC_007644:161222:160716160716161225510Moorella thermoacetica ATCC 39073, complete genomeUvrB/UvrC protein9e-27119
NC_016884:256598:274479274479275024546Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeUvrB/UvrC protein2e-26118
NC_015757:263938:281819281819282364546Sulfobacillus acidophilus TPY chromosome, complete genomeUvrB/UvrC protein2e-26118
NC_013316:1:411774117741671495Clostridium difficile R20291, complete genomeputative DNA repair protein1e-24112
NC_007503:2098980:210718721071872107705519Carboxydothermus hydrogenoformans Z-2901, complete genomeuvrB/uvrC motif domain protein6e-23106
NC_010723:173280:215938215938216513576Clostridium botulinum E3 str. Alaska E43, complete genomeMcsA2e-22105
NC_002570:126500:133288133288133821534Bacillus halodurans C-125, complete genomehypothetical protein1e-22105
NC_009012:2100000:211492921149292115435507Clostridium thermocellum ATCC 27405, complete genomeUvrB/UvrC protein3e-22104
NC_014378:131810:144738144738145265528Acetohalobium arabaticum DSM 5501 chromosome, complete genomeUvrB/UvrC protein3e-22104
NC_010674:192951:214143214143214718576Clostridium botulinum B str. Eklund 17B, complete genomeMcsA4e-22103
NC_011567:75306:894038940389954552Anoxybacillus flavithermus WK1, complete genomeModulator of heat shock repressor CtsR, McsA2e-2098.6
NC_014219:83888:102994102994103533540Bacillus selenitireducens MLS10 chromosome, complete genomeUvrB/UvrC protein2e-2098.2
NC_020134:301500:304712304712305212501Clostridium stercorarium subsp. stercorarium DSM 8532, completeputative UvrB/UvrC protein4e-2097.4
NC_018704:81733:107554107554108102549Amphibacillus xylanus NBRC 15112, complete genomeputative activator protein McsA1e-1996.3
NC_010001:4250828:426290642629064263427522Clostridium phytofermentans ISDg, complete genomeUvrB/UvrC protein3e-1994.4
NC_012778:688621:690234690234690833600Eubacterium eligens ATCC 27750, complete genomehypothetical protein4e-1994
NC_004193:79588:109929109929110486558Oceanobacillus iheyensis HTE831, complete genomehypothetical protein6e-1993.6
NC_008262:2649289:265792426579242658451528Clostridium perfringens SM101, complete genomehypothetical protein1e-1789.4
NC_003366:2788268:279173427917342792333600Clostridium perfringens str. 13, complete genomehypothetical protein1e-1789.4
NC_008261:3014373:301437330143733014909537Clostridium perfringens ATCC 13124, complete genomehypothetical protein1e-1789
NC_014152:241776:260878260878261405528Thermincola sp. JR, complete genomeUvrB/UvrC protein2e-1788.2
NC_014654:2138794:214491221449122145457546Halanaerobium sp. 'sapolanicus' chromosome, complete genomeUvrB/UvrC protein4e-1787.4
NC_019903:421000:426780426780427277498Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,hypothetical protein2e-1685.1
NC_017208:64500:969779697797525549Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeClpC ATPase1e-1479.3
NC_014171:71963:949069490695454549Bacillus thuringiensis BMB171 chromosome, complete genomeClpC ATPase4e-1477.8
NC_012489:1874415:189729318972931897778486Gemmatimonas aurantiaca T-27, complete genomehypothetical protein1e-1272.4
NC_004461:277291:283165283165283728564Staphylococcus epidermidis ATCC 12228, complete genomehypothetical protein1e-1065.9
NC_011999:2023248:202424220242422024628387Macrococcus caseolyticus JCSC5402, complete genomehypothetical protein4e-1063.9
NC_011297:1296968:130905713090571309497441Dictyoglomus thermophilum H-6-12, complete genomeUvrB/UvrC motif domain protein2e-0962
NC_010382:4479464:449656944965694497117549Lysinibacillus sphaericus C3-41, complete genomehypothetical protein3e-0961.6