Pre_GI: BLASTP Hits

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Query: NC_008593:1797000:1819017 Clostridium novyi NT, complete genome

Start: 1819017, End: 1819412, Length: 396

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015425:2024154:204577020457702046165396Clostridium botulinum BKT015925 chromosome, complete genomeribose ABC transporter protein RbsD9e-62234
NC_008261:2117207:211974921197492120144396Clostridium perfringens ATCC 13124, complete genomeribose ABC transporter, ribose-binding protein7e-52202
NC_003366:1901898:190443919044391904834396Clostridium perfringens str. 13, complete genomeprobable ribose ABC transporter3e-51199
NC_004557:2475030:249155124915512491946396Clostridium tetani E88, complete genomehigh affinity ribose transport protein rbsD2e-49194
NC_014538:187747:203474203474203866393Thermoanaerobacter sp. X513 chromosome, complete genomeRbsD or FucU transport9e-33138
NC_010320:143109:163609163609164001393Thermoanaerobacter sp. X514 chromosome, complete genomeD-ribose pyranase9e-33138
NC_012214:1:253832538325802420Erwinia pyrifoliae Ep1/96, complete genomeD-ribose high-affinity transport system1e-31134
NC_004337:3590323:394205639420563942475420Shigella flexneri 2a str. 301, complete genomeD-ribose high-affinity transport system; membrane-associated protein6e-31132
NC_016614:686887:699051699051699470420Vibrio sp. EJY3 chromosome 2, complete sequenceD-ribose pyranase2e-30130
NC_015161:1556766:156242115624211562816396Deinococcus proteolyticus MRP chromosome, complete genomeD-ribose pyranase2e-27121
NC_017095:166896:168375168375168761387Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeABC-type ribose transport system, auxiliary component3e-27120
NC_004722:650950:657537657537657932396Bacillus cereus ATCC 14579, complete genomeHigh affinity ribose transport protein rbsD3e-27120
NC_011725:681387:687974687974688369396Bacillus cereus B4264 chromosome, complete genomeD-ribose pyranase5e-27119
NC_011969:726369:733401733401733796396Bacillus cereus Q1 chromosome, complete genomed-ribose pyranase5e-27119
NC_016771:701909:711761711761712156396Bacillus cereus NC7401, complete genomeribose ABC transporter protein5e-27119
NC_011772:647778:655881655881656276396Bacillus cereus G9842, complete genomeribose ABC transporter protein4e-27119
NC_017208:671128:680051680051680446396Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeD-ribose pyranase4e-27119
NC_010184:661226:669170669170669565396Bacillus weihenstephanensis KBAB4, complete genomeRbsD or FucU transport1e-26118
NC_010556:2328303:234760123476012347990390Exiguobacterium sibiricum 255-15, complete genomeRbsD or FucU transport1e-26118
NC_006274:659922:672436672436672831396Bacillus cereus E33L, complete genomeribose ABC transporter, permease5e-26116
NC_016511:15100:220682206822451384Propionibacterium acnes TypeIA2 P.acn31 chromosome, completeD-ribose pyranase4e-26116
NC_016512:15102:220702207022453384Propionibacterium acnes TypeIA2 P.acn17 chromosome, completeD-ribose pyranase4e-26116
NC_016516:15102:220702207022453384Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeD-ribose pyranase4e-26116
NC_015589:1468774:148905014890501489448399Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeRbsD or FucU transport4e-26116
NC_014039:15236:222032220322586384Propionibacterium acnes SK137 chromosome, complete genomeRibose ABC transport system, high affinity permease RbsD3e-26116
NC_018665:2163713:218550121855012185890390Exiguobacterium antarcticum B7 chromosome, complete genomeD-ribose pyranase1e-25115
NC_006085:15246:222142221422597384Propionibacterium acnes KPA171202, complete genomehigh affinity ribose transport protein RbsD8e-26115
NC_007530:674265:684105684105684500396Bacillus anthracis str. 'Ames Ancestor', complete genomeribose abc transporter protein8e-26115
NC_005945:674337:684000684000684395396Bacillus anthracis str. Sterne, complete genomeribose ABC transporter protein8e-26115
NC_003997:674265:684104684104684499396Bacillus anthracis str. Ames, complete genomeribose ABC transporter protein8e-26115
NC_005957:667954:674987674987675382396Bacillus thuringiensis serovar konkukian str. 97-27, completeribose ABC transporter, permease8e-26115
NC_011773:688689:698542698542698937396Bacillus cereus AH820 chromosome, complete genomeD-ribose pyranase8e-26115
NC_012659:678289:684005684005684400396Bacillus anthracis str. A0248, complete genomeD-ribose pyranase8e-26115
NC_016779:657568:665514665514665909396Bacillus cereus F837/76 chromosome, complete genomeRibose ABC transporter high affinity permease RbsD8e-26115
NC_012785:638000:648054648054648452399Kosmotoga olearia TBF 19.5.1, complete genomeRbsD or FucU transport2e-25114
NC_011978:1581994:158610815861081586515408Thermotoga neapolitana DSM 4359, complete genomeRibose ABC transporter, membrane-associated protein1e-23108
NC_000853:960248:976804976804977211408Thermotoga maritima MSB8, complete genomeribose ABC transporter, membrane-associated protein1e-23108
NC_016113:11500:286142861429003390Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequenceribose ABC transporter (membrane bound ribose binding)4e-23106
NC_013205:2332174:234225723422572342652396Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,RbsD or FucU transport4e-23106
NC_021177:7159654:718079171807917181180390Streptomyces fulvissimus DSM 40593, complete genomeD-ribose pyranase 2 n13e-2097.1
NC_008148:1859888:191606419160641916528465Rubrobacter xylanophilus DSM 9941, complete genomeRbsD or FucU transport2e-1891.3
NC_013721:1581370:159709915970991597494396Gardnerella vaginalis 409-05, complete genomeRbsD/FucU transport family protein3e-1890.5
NC_017218:1655009:167606016760601676455396Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeRbsD/FucU transport family protein3e-1580.5
NC_014169:1784435:181122018112201811615396Bifidobacterium longum subsp. longum JDM301 chromosome, completeRbsD/FucU transport family protein5e-1579.7
NC_013521:107937:112705112705113088384Sanguibacter keddieii DSM 10542, complete genomeABC-type ribose transport system, auxiliary component6e-1372.8
NC_013406:4478000:449330444933044493732429Paenibacillus sp. Y412MC10 chromosome, complete genomeRbsD or FucU transport7e-0959.3
NC_016631:2583762:258984825898482590285438Granulicella mallensis MP5ACTX8 chromosome, complete genometransport protein RbsD/FucU2e-0651.6
NC_014364:815346:829047829047829451405Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeRbsD or FucU transport7e-0649.3