Pre_GI: BLASTP Hits

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Query: NC_008593:1704207:1716059 Clostridium novyi NT, complete genome

Start: 1716059, End: 1717123, Length: 1065

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021182:2192718:2202746220274622037861041Clostridium pasteurianum BC1, complete genomeheat shock gene repressor HrcA3e-101368
NC_010520:3204480:3217874321787432189051032Clostridium botulinum A3 str. Loch Maree, complete genomeheat-inducible transcriptional repressor HrcA2e-100365
NC_012658:3213498:3226943322694332279741032Clostridium botulinum Ba4 str. 657 chromosome, complete genomeheat-inducible transcription repressor4e-100364
NC_010516:3196158:3209552320955232105831032Clostridium botulinum B1 str. Okra, complete genomeheat-inducible transcriptional repressor HrcA6e-100364
NC_009699:3178222:3192098319209831931291032Clostridium botulinum F str. Langeland chromosome, complete genomeheat-inducible transcription repressor9e-100363
NC_017297:3178378:3192254319225431932851032Clostridium botulinum F str. 230613 chromosome, complete genomeheat-inducible transcription repressor HrcA9e-100363
NC_012563:3374904:3388166338816633891971032Clostridium botulinum A2 str. Kyoto, complete genomeheat-inducible transcription repressor HrcA7e-100363
NC_009495:3138355:3151617315161731526481032Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeheat-inducible transcription repressor7e-100363
NC_009697:3071198:3084460308446030854911032Clostridium botulinum A str. ATCC 19397 chromosome, completeheat-inducible transcription repressor7e-100363
NC_009698:3006500:3021382302138230224131032Clostridium botulinum A str. Hall chromosome, complete genomeheat-inducible transcription repressor7e-100363
NC_008261:2524913:2540197254019725412161020Clostridium perfringens ATCC 13124, complete genomeheat-inducible transcription repressor HrcA2e-96352
NC_020291:1014333:1018381101838110194121032Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeheat-inducible transcription repressor HrcA2e-95349
NC_016627:3205333:3217810321781032189341125Clostridium clariflavum DSM 19732 chromosome, complete genomeheat shock gene repressor HrcA3e-74278
NC_009012:1595498:1607013160701316080681056Clostridium thermocellum ATCC 27405, complete genomeheat-inducible transcription repressor HrcA1e-69263
NC_014721:1629063:1644532164453216455631032Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeheat-inducible transcription repressor hrca6e-68258
NC_009633:3055413:3082999308299930840301032Alkaliphilus metalliredigens QYMF chromosome, complete genomeheat-inducible transcription repressor HrcA1e-67257
NC_008600:4101748:4117088411708841181041017Bacillus thuringiensis str. Al Hakam, complete genomeheat-inducible transcription repressor2e-66253
NC_011658:4107501:4123041412304141240571017Bacillus cereus AH187 chromosome, complete genomeheat-inducible transcription repressor4e-66252
NC_014171:4178746:4190319419031941913351017Bacillus thuringiensis BMB171 chromosome, complete genomeheat-inducible transcription repressor4e-66252
NC_011725:4288309:4300150430015043011661017Bacillus cereus B4264 chromosome, complete genomeheat-inducible transcription repressor4e-66252
NC_004722:4244730:4256576425657642575921017Bacillus cereus ATCC 14579, complete genomeheat-inducible transcription repressor4e-66252
NC_011969:4001489:4018129401812940191451017Bacillus cereus Q1 chromosome, complete genomeheat-inducible transcription repressor4e-66252
NC_016771:4059445:4076825407682540778411017Bacillus cereus NC7401, complete genomeheat-inducible transcription repressor HrcA4e-66252
NC_006274:4159096:4172225417222541732411017Bacillus cereus E33L, complete genomeheat-inducible transcription repressor3e-66252
NC_012472:4119192:4134532413453241355481017Bacillus cereus 03BB102, complete genomeheat-inducible transcription repressor HrcA3e-66252
NC_016779:4039103:4052230405223040532461017Bacillus cereus F837/76 chromosome, complete genomeHeat-inducible transcription repressor HrcA3e-66252
NC_017208:4294341:4306183430618343071991017Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeheat-inducible transcription repressor3e-66252
NC_011772:4255161:4266983426698342679991017Bacillus cereus G9842, complete genomeheat-inducible transcription repressor HrcA3e-66252
NC_007530:4117071:4130197413019741312131017Bacillus anthracis str. 'Ames Ancestor', complete genomeheat-inducible transcription repressor8e-66251
NC_005945:4116978:4130571413057141315871017Bacillus anthracis str. Sterne, complete genomeheat-inducible transcription repressor8e-66251
NC_003997:4116944:4130070413007041310861017Bacillus anthracis str. Ames, complete genomeheat-inducible transcription repressor8e-66251
NC_012581:4118366:4131492413149241325081017Bacillus anthracis str. CDC 684 chromosome, complete genomeheat-inducible transcription repressor8e-66251
NC_012659:4116971:4130097413009741311131017Bacillus anthracis str. A0248, complete genomeheat-inducible transcription repressor8e-66251
NC_005957:4104880:4118008411800841190241017Bacillus thuringiensis serovar konkukian str. 97-27, completeheat-inducible transcription repressor6e-66251
NC_011773:4108855:4121982412198241229981017Bacillus cereus AH820 chromosome, complete genomeheat-inducible transcription repressor6e-66251
NC_010184:4155345:4168675416867541696911017Bacillus weihenstephanensis KBAB4, complete genomeheat-inducible transcription repressor HrcA9e-66250
NC_003909:4064904:4078700407870040797161017Bacillus cereus ATCC 10987, complete genomeheat-inducible transcription repressor1e-65250
NC_014335:4027105:4040231404023140412471017Bacillus cereus biovar anthracis str. CI chromosome, completeheat-inducible transcription repressor4e-65248
NC_019903:3048132:3060903306090330619401038Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,heat-inducible transcription repressor HrcA1e-62240
NC_009674:3073564:3088961308896130899921032Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeheat-inducible transcription repressor3e-62239
NC_018515:4148037:4161973416197341630041032Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeheat-inducible transcription repressor HrcA5e-60231
NC_010001:2836995:2850644285064428516811038Clostridium phytofermentans ISDg, complete genomeheat-inducible transcription repressor HrcA6e-60231
NC_020134:2193900:2208367220836722094191053Clostridium stercorarium subsp. stercorarium DSM 8532, completeheat-inducible transcription repressor HrcA5e-58224
NC_002570:1426000:1429386142938614304171032Bacillus halodurans C-125, complete genomeheat-inducible transcription repressor3e-56219
NC_013216:3408608:3423372342337234244091038Desulfotomaculum acetoxidans DSM 771, complete genomeheat-inducible transcription repressor HrcA2e-54213
NC_009925:1109770:1111366111136611124691104Acaryochloris marina MBIC11017, complete genomeheat-inducible transcription repressor HrcA3e-46186
NC_011297:1167615:1171139117113911721671029Dictyoglomus thermophilum H-6-12, complete genomeheat-inducible transcription repressor HrcA1e-44181
NC_011661:1332309:1351556135155613525871032Dictyoglomus turgidum DSM 6724, complete genomeheat-inducible transcription repressor HrcA7e-44178
NC_003919:1716831:1753445175344517544761032Xanthomonas axonopodis pv. citri str. 306, complete genomeheat-inducible transcription repressor4e-41168
NC_010610:861194:8828688828688839231056Lactobacillus fermentum IFO 3956, complete genomeheat-inducible transcription repressor2e-40166
NC_016147:1672482:1694925169492516959951071Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeheat-inducible transcription repressor2e-40166
NC_018681:2176000:2194680219468021957111032Nocardia brasiliensis ATCC 700358 chromosome, complete genomeheat-inducible transcription repressor1e-39164
NC_002944:2373873:2395707239570723967381032Mycobacterium avium subsp. paratuberculosis K-10, complete genomeheat-inducible transcription repressor3e-39162
NC_007947:797456:8130538130538140721020Methylobacillus flagellatus KT, complete genomenegative regulator of class I heat shock protein3e-39162
NC_017277:240863:2582272582272593631137Synechocystis sp. PCC 6803, complete genomeCIRCE-binding heat-inducible transcription repressor5e-39161
NC_017052:240851:2582152582152593511137Synechocystis sp. PCC 6803 substr. PCC-N, complete genomeCIRCE-binding heat-inducible transcription repressor5e-39161
NC_017039:240863:2582272582272593631137Synechocystis sp. PCC 6803 substr. PCC-P, complete genomeCIRCE-binding heat-inducible transcription repressor5e-39161
NC_000911:240863:2582272582272593631137Synechocystis sp. PCC 6803, complete genomeheat-inducible transcription repressor5e-39161
NC_014758:245707:2564582564582575041047Calditerrivibrio nitroreducens DSM 19672 chromosome, completeheat-inducible transcription repressor hrca1e-38160
NC_013525:1871795:1888754188875418897881035Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genomeheat-inducible transcription repressor HrcA4e-38159
NC_015677:3520524:3533211353321135342121002Ramlibacter tataouinensis TTB310 chromosome, complete genometranscriptional regulator HrcA1e-37157
NC_011992:863174:8749598749598759631005Acidovorax ebreus TPSY, complete genomeheat-inducible transcription repressor HrcA1e-37157
NC_014910:1050706:1054176105417610551801005Alicycliphilus denitrificans BC chromosome, complete genomeheat-inducible transcription repressor hrca1e-37157
NC_017059:2771085:2801815280181528028731059Rhodospirillum photometricum DSM 122, complete genomeHeat-inducible transcription repressor HrcA4e-37155
NC_008752:3955327:3963779396377939647831005Acidovorax avenae subsp. citrulli AAC00-1, complete genomeheat-inducible transcription repressor HrcA3e-36152
NC_014727:1292213:1297928129792812989711044Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,heat-inducible transcription repressor hrca1e-35150
NC_008054:1117703:1120206112020611212881083Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeHeat-inducible transcription repressor HrcA4e-35148
NC_008529:1133665:1137417113741711384601044Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeTranscriptional regulator of heat shock gene9e-35147
NC_007622:1558753:157123115712311572208978Staphylococcus aureus RF122, complete genomeheat-inducible transcription repressor2e-34146
NC_013517:825100:8464778464778474871011Sebaldella termitidis ATCC 33386, complete genomeheat-inducible transcription repressor HrcA4e-34145
NC_014366:2826575:2851691285169128528151125Gamma proteobacterium HdN1, complete genomeNegative regulator of class I heat shock protein8e-34144
NC_013515:1483471:1491688149168814927191032Streptobacillus moniliformis DSM 12112, complete genomeheat-inducible transcription repressor HrcA2e-33143
NC_011071:1773847:1794982179498217960461065Stenotrophomonas maltophilia R551-3, complete genomeheat-inducible transcription repressor HrcA6e-33141
NC_007802:179780:1983171983171993811065Jannaschia sp. CCS1, complete genomenegative regulator of class I heat shock protein2e-30133
NC_008044:3024125:3041186304118630422501065Silicibacter sp. TM1040, complete genomeheat-inducible transcription repressor HrcA1e-29130
NC_006677:1391984:1405514140551414065841071Gluconobacter oxydans 621H, complete genomeheat-inducible transcription repressor2e-29129
NC_002179:237854:2579322579322591551224Chlamydophila pneumoniae AR39, complete genomeheat-inducible transcription repressor2e-28126
NC_007633:446899:4539214539214549431023Mycoplasma capricolum subsp. capricolum ATCC 27343, completeheat-inducible transcription repressor HrcA2e-27123
NC_014751:449001:4560214560214570431023Mycoplasma leachii PG50 chromosome, complete genomeheat-inducible transcription repressor HrcA1e-26120
NC_002620:803696:8036968036968048741179Chlamydia muridarum Nigg, complete genomeheat-inducible transcription repressor9e-26117
NC_000908:215000:2445662445662455971032Mycoplasma genitalium G37, complete genomeheat-inducible transcription repressor1e-25117
NC_017431:451551:4503944503944515541161Chlamydia trachomatis E/11023 chromosome, complete genomeheat-inducible transcription repressor5e-25115
NC_017439:451535:4503784503784515381161Chlamydia trachomatis E/150 chromosome, complete genomeheat-inducible transcription repressor5e-25115
NC_010287:769600:7684257684257696031179Chlamydia trachomatis 434/Bu, complete genomePutative transcriptional regulatory protein1e-24114
NC_010280:769639:7684647684647696421179Chlamydia trachomatis L2b/UCH-1/proctitis, complete genomePutative transcriptional regulatory protein1e-24114
NC_005303:780557:8056948056948067221029Onion yellows phytoplasma OY-M, complete genomeheat-inducible transcription repressor5e-24112
NC_015760:123929:1247031247031257371035Streptococcus salivarius CCHSS3, complete genomeheat-inducible transcription repressor hrcA7e-24111
NC_011999:1320159:133550313355031336456954Macrococcus caseolyticus JCSC5402, complete genomeheat-inducible transcriptional repressor HrcA1e-23110
NC_011047:255208:2710832710832721141032Candidatus Phytoplasma mali, complete genomeHeat-inducible transcription repressor4e-23109
NC_013355:1332263:1352222135222213532591038Zymomonas mobilis subsp. mobilis NCIB 11163, complete genomeheat-inducible transcription repressor HrcA5e-22105
NC_009442:277392:2895232895232905781056Streptococcus suis 05ZYH33 chromosome, complete genomeheat-inducible transcription repressor5e-22105
NC_009443:277246:2893772893772904321056Streptococcus suis 98HAH33, complete genomeheat-inducible transcription repressor5e-22105
NC_012925:275704:2899062899062909401035Streptococcus suis P1/7, complete genomeheat-inducible transcription repressor4e-22105
NC_012924:277325:2894712894712905051035Streptococcus suis SC84, complete genomeheat-inducible transcription repressor4e-22105
NC_015433:285581:3007993007993018331035Streptococcus suis ST3 chromosome, complete genomeheat-inducible transcription repressor4e-21102
NC_006448:121435:1214351214351225171083Streptococcus thermophilus LMG 18311, complete genomeheat-inducible transcription repressor5e-21102
NC_006449:121462:1214621214621225441083Streptococcus thermophilus CNRZ1066, complete genomeheat-inducible transcription repressor5e-21102
NC_016751:1227495:1243063124306312440731011Marinitoga piezophila KA3 chromosome, complete genometranscriptional regulator of heat shock gene3e-1479.7
NC_012806:105133:1440541440541451061053Mycoplasma conjunctivae, complete genomeHeat-inducible transcription repressor hrcA2e-1170.5
NC_009850:2169459:219613721961372196928792Arcobacter butzleri RM4018, complete genomeputative heat shock regulator1e-0654.3
NC_015674:1114915:113229611322961133096801Helicobacter bizzozeronii CIII-1, complete genomeheat-inducible transcription repressor HrcA5e-0652.4
NC_017280:689067:704117704117704908792Campylobacter jejuni subsp. jejuni M1 chromosome, complete genomeHeat-inducible transcription repressor hrcA1e-0551.6
NC_008787:685401:700246700246701037792Campylobacter jejuni subsp. jejuni 81-176, complete genomeheat-inducible transcription repressor HrcA1e-0551.6