Pre_GI: BLASTP Hits

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Query: NC_008593:1060548:1067342 Clostridium novyi NT, complete genome

Start: 1067342, End: 1067983, Length: 642

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021182:2921000:295062929506292951270642Clostridium pasteurianum BC1, complete genomeHAD-superfamily subfamily IB hydrolase, TIGR014901e-73276
NC_014328:1046958:104695810469581047602645Clostridium ljungdahlii ATCC 49587 chromosome, complete genomephosphoserine phosphatase1e-68259
NC_009617:4946000:496786949678694968507639Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeHAD family hydrolase3e-67254
NC_020291:4944835:500548650054865006124639Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeHAD-superfamily subfamily IB hydrolase, TIGR014902e-65248
NC_014330:2520906:253918525391852539841657Brachyspira pilosicoli 95/1000 chromosome, complete genomeputative phosphoserine phosphatase SerB8e-1684
NC_018604:1489567:151067815106781511334657Brachyspira pilosicoli WesB complete genomeputative phosphoserine phosphatase SerB8e-1684
NC_018607:1251357:127194412719441272543600Brachyspira pilosicoli B2904 chromosome, complete genomeHAD-superfamily hydrolase5e-1581.3
NC_013192:1765981:176957017695701770247678Leptotrichia buccalis DSM 1135, complete genomeHAD-superfamily subfamily IB hydrolase2e-1479.3
NC_014394:3036758:306766830676683068282615Gallionella capsiferriformans ES-2 chromosome, complete genomeHAD-superfamily subfamily IB hydrolase, TIGR014906e-1374.3
NC_016582:7101701:710170171017017102537837Streptomyces bingchenggensis BCW-1 chromosome, complete genomemorphological differentiation-associated protein8e-1270.5
NC_006512:2789098:279357227935722794240669Idiomarina loihiensis L2TR, complete genomeProbable phosphoserine phosphatase, HAD-superfamily hydrolase1e-1170.1
NC_011768:3854455:385588038558803856542663Desulfatibacillum alkenivorans AK-01, complete genomeHAD-superfamily subfamily IB hydrolase, TIGR014902e-1169.3
NC_009256:2509806:251094025109402511560621Burkholderia vietnamiensis G4 chromosome 1, complete sequenceHAD family hydrolase2e-1168.9
NC_016002:2037374:207892820789282079596669Pseudogulbenkiania sp. NH8B, complete genomeHAD family hydrolase3e-1168.6
NC_011979:589874:593387593387594106720Geobacter sp. FRC-32, complete genomeHAD-superfamily subfamily IB hydrolase, TIGR014907e-1167.4
NC_013960:3379515:338517133851713385836666Nitrosococcus halophilus Nc4 chromosome, complete genomeHAD-superfamily subfamily IB hydrolase, TIGR014909e-1167
NC_011283:4438500:443862944386294439294666Klebsiella pneumoniae 342 chromosome, complete genomeHAD-superfamily hydrolase1e-1067
NC_008463:4389721:441518444151844415837654Pseudomonas aeruginosa UCBPP-PA14, complete genomePossible phosphoserine phosphatase1e-1066.6
NC_016114:3938721:394742439474243948263840Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeHAD-superfamily hydrolase1e-1066.6
NC_014391:421547:436794436794437600807Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeHAD-superfamily hydrolase1e-1066.2
NC_018080:4280401:430595043059504306603654Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein1e-1066.2
NC_012731:1088321:110805311080531108718666Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomefamily IB HAD-hydrolase2e-1065.9
NC_008390:2448379:245191424519142452597684Burkholderia cepacia AMMD chromosome 1, complete sequenceHAD-superfamily subfamily IB hydrolase, TIGR014903e-1065.1
NC_003155:5616000:562228656222865623119834Streptomyces avermitilis MA-4680, complete genomemorphological differentiation-associated protein4e-1064.7
NC_019908:700000:700901700901701506606Brachyspira pilosicoli P43/6/78 chromosome, complete genomephosphoserine phosphatase SerB5e-1064.3
NC_002163:1354215:137205613720561372691636Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomehypothetical protein4e-0961.6
NC_018080:1730534:174928317492831749933651Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein5e-0857.8
NC_012660:5242392:525551052555105256166657Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein1e-0757
NC_007484:2222474:223360222336022234231630Nitrosococcus oceani ATCC 19707, complete genomeHAD-superfamily hydrolase subfamily IB, PSPase-like2e-0756.2
NC_006856:26438:429774297743585609Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein4e-0754.7
NC_016628:1190366:121414412141441214803660Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceHAD-superfamily hydrolase5e-0754.7
NC_017295:279633:295405295405296148744Clostridium acetobutylicum EA 2018 chromosome, complete genomePhosphoserine phosphatase related protein4e-0651.6
NC_003030:279643:295415295415296158744Clostridium acetobutylicum ATCC 824, complete genomePhosphoserine phosphatase related protein4e-0651.6
NC_015687:279641:295413295413296156744Clostridium acetobutylicum DSM 1731 chromosome, complete genomephosphoserine phosphatase-like protein4e-0651.6