Pre_GI: BLASTP Hits

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Query: NC_008543:90312:107603 Burkholderia cenocepacia HI2424 chromosome 2, complete sequence

Start: 107603, End: 108166, Length: 564

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism (HI2424; BCC1) was isolated as part of a study to find this organism in natural environments. Samples taken from fields that were planted with onions in New York in 1999 and 2000 were examined and it was discovered that isolates were the same as ones that can infect CF patients. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008061:2153495:216160721616072162170564Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, TetR family1e-96351
NC_008545:115292:127562127562128125564Burkholderia cenocepacia HI2424 plasmid 1, complete sequencetranscriptional regulator, TetR family3e-96350
NC_010552:335989:345128345128345691564Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, TetR family5e-91333
NC_010515:1375091:140668514066851407248564Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetranscriptional regulator, TetR family6e-91333
NC_008390:2156188:217708321770832177646564Burkholderia cepacia AMMD chromosome 1, complete sequencetranscriptional regulator, TetR family3e-57221
NC_004578:4781326:480645848064584807027570Pseudomonas syringae pv. tomato str. DC3000, complete genometranscriptional regulator, TetR family2e-35148
NC_004578:4781326:480170948017094802299591Pseudomonas syringae pv. tomato str. DC3000, complete genometranscriptional regulator, TetR family3e-32138
NC_012791:2233098:224178422417842242434651Variovorax paradoxus S110 chromosome 1, complete genometranscriptional regulator, TetR family1e-27122
NC_008740:443274:483508483508484074567Marinobacter aquaeolei VT8, complete genometranscriptional regulator, TetR family1e-1996.3
NC_016147:1672482:167954316795431680130588Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeTetR family transcriptional regulator3e-1891.7
NC_009925:2240871:225482422548242255411588Acaryochloris marina MBIC11017, complete genometranscriptional regulator, TetR family1e-1686.3
NC_008750:2332000:234367323436732344257585Shewanella sp. W3-18-1, complete genometranscriptional regulator, TetR family2e-1582
NC_011071:1877500:190017419001741900761588Stenotrophomonas maltophilia R551-3, complete genometranscriptional regulator, TetR family2e-1479
NC_002678:3701500:370335737033573703944588Mesorhizobium loti MAFF303099, complete genometranscriptional regulator (tetR-family)1e-1375.9
NC_011887:72364:813868138681883498Methylobacterium nodulans ORS 2060 plasmid pMNOD02, completetranscriptional regulator, TetR family2e-1375.1
NC_004431:3409389:344279834427983443358561Escherichia coli CFT073, complete genomehypothetical protein4e-1374.3
NC_011751:3453683:346686434668643467424561Escherichia coli UMN026 chromosome, complete genomeputative transcriptional regulator4e-1374.3
NC_010625:1370462:139744613974461398036591Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencetranscriptional regulator, TetR family3e-1271.2
NC_010557:207846:223133223133223699567Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, TetR family4e-1271.2
NC_009659:1024201:104447610444761045036561Janthinobacterium sp. Marseille chromosome, complete genomeTetR family transcriptional regulator7e-1270.1
NC_011001:568970:568970568970569545576Burkholderia cenocepacia J2315 chromosome 2, complete sequenceTetR family regulatory protein8e-1270.1
NC_008527:125723:131535131535132074540Lactococcus lactis subsp. cremoris SK11, complete genomeTranscriptional regulator1e-1169.7
NC_014258:42262:438174381744380564Pantoea vagans C9-1 plasmid pPag3, complete sequenceHTH-type transcriptional regulator2e-1168.9
NC_014217:716500:720611720611721195585Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, TetR family2e-1168.6
NC_020064:3998715:403922240392224039806585Serratia marcescens FGI94, complete genometranscriptional regulator4e-1167.8
NC_009659:1129066:114502411450241145587564Janthinobacterium sp. Marseille chromosome, complete genomeTetR family transcriptional regulator1e-1065.9
NC_016514:1183356:118976111897611190348588Enterobacter cloacae EcWSU1 chromosome, complete genomeTetR family transcriptional Regulator7e-0960.1
NC_017249:263873:265374265374265943570Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-0859.3
NC_013956:1762171:178770317877031788275573Pantoea ananatis LMG 20103 chromosome, complete genomeYdhM8e-0857
NC_006177:1060428:107883110788311079454624Symbiobacterium thermophilum IAM 14863, complete genomeTetR family transcriptional regulator6e-0753.9
NC_014158:1651326:166301016630101663705696Tsukamurella paurometabola DSM 20162 chromosome, complete genometranscriptional regulator, TetR family7e-0753.5
NC_015738:220000:226778226778227443666Eggerthella sp. YY7918, complete genometranscriptional regulator3e-0651.6