Pre_GI: BLASTP Hits

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Query: NC_008435:3915110:3927415 Rhodopseudomonas palustris BisA53, complete genome

Start: 3927415, End: 3928221, Length: 807

Host Lineage: Rhodopseudomonas palustris; Rhodopseudomonas; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Four different strains were isolated from 2 sites, one pristine and one polluted. Environmental bacterium with potential use in bioremediation. This organism has a diverse metabolism and is capable of growth using light, inorganic, or organic compounds as energy sources and carbon dioxide or organic compounds as carbon sources. Commonly found in soil and water environments this bacterium is also capable of degrading a wide range of toxic organic compounds, and may be of use in bioremediation of polluted sites. The bacterium undergoes differentiation to produce a stalked nonmotile cell and a motile flagellated cell. In the presence of light, this bacterium produces a number of intracellular membranous vesicles to house the photosynthetic reaction centers.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011894:6888562:691263169126316913443813Methylobacterium nodulans ORS 2060, complete genometwo component transcriptional regulator, LuxR family3e-1995.9
NC_008435:3915110:392840139284013928994594Rhodopseudomonas palustris BisA53, complete genomeresponse regulator receiver protein5e-1788.2
NC_016614:1152500:117034811703481171028681Vibrio sp. EJY3 chromosome 2, complete sequencetranscriptional regulator NarL2e-1169.7
NC_013859:61586:854088540885992585Azospirillum sp. B510 plasmid pAB510e, complete sequencetwo-component response regulator3e-1169.3
NC_010172:3946644:396050139605013961262762Methylobacterium extorquens PA1, complete genomeregulatory protein LuxR5e-1168.2
NC_014829:3877701:389242738924273893125699Bacillus cellulosilyticus DSM 2522 chromosome, complete genometwo component transcriptional regulator, LuxR family9e-1167.4
NC_021171:4277484:429816842981684298896729Bacillus sp. 1NLA3E, complete genomeresponse regulator DegU1e-1067
NC_015434:228912:2514672514672526271161Verrucosispora maris AB-18-032 chromosome, complete genomeLuxR family transcriptional regulator9e-1064.3
NC_003197:1207597:122972812297281230378651Salmonella typhimurium LT2, complete genomeputative transcriptional regulator2e-0962.8
NC_011080:1209935:123151512315151232165651Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator CsgD2e-0962.8
NC_011083:1216500:123407712340771234727651Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transcriptional regulator CsgD2e-0962.8
NC_006905:1186895:120981312098131210463651Salmonella enterica subsp. enterica serovar Choleraesuis strputative transcriptional regulator (LuxR/UhpA family)2e-0962.8
NC_016831:947281:992760992760993410651Salmonella enterica subsp. enterica serovar Gallinarum/pullorumcsg operon transcriptional regulator protein3e-0962.8
NC_017046:1164176:118594111859411186513573Salmonella enterica subsp. enterica serovar Typhimurium str. 798csg operon transcriptional regulator protein3e-0962.8
NC_009767:5464796:546773054677305468371642Roseiflexus castenholzii DSM 13941, complete genometwo component transcriptional regulator, LuxR family3e-0962.8
NC_011094:1166271:118803511880351188685651Salmonella enterica subsp. enterica serovar Schwarzengrund strDNA-binding transcriptional regulator CsgD2e-0962.8
NC_011147:1763681:176368117636811764331651Salmonella enterica subsp. enterica serovar Paratyphi A strDNA-binding transcriptional regulator CsgD2e-0962.8
NC_010067:632683:648920648920649564645Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-0962.8
AC_000091:1083798:110278711027871103437651Escherichia coli W3110 DNA, complete genomeDNA-binding transcriptional activator in two-component regulatory system2e-0962.8
NC_000913:1087062:110176911017691102419651Escherichia coli K12, complete genomeDNA-binding transcriptional activator in two-component regulatory system2e-0962.8
NC_004337:1065609:107870710787071079357651Shigella flexneri 2a str. 301, complete genomeprobable csgAB operon transcriptional regulatory protein2e-0962.8
NC_008258:1076922:109674910967491097399651Shigella flexneri 5 str. 8401, complete genomeProbable csgAB operon transcriptional Regulatory protein2e-0962.8
NC_016863:1165232:118718111871811187831651Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1DNA-binding transcriptional regulator CsgD2e-0962.8
NC_016860:1205282:122741412274141228064651Salmonella enterica subsp. enterica serovar Typhimurium strDNA-binding transcriptional regulator CsgD2e-0962.8
NC_010718:2460893:247049824704982471184687Natranaerobius thermophilus JW/NM-WN-LF, complete genometwo component transcriptional regulator, LuxR family4e-0962
NC_015761:2227500:222939822293982230042645Salmonella bongori NCTC 12419, complete genomenitrate/nitrite response regulator protein NarP5e-0962
NC_014121:2629075:264193326419332642583651Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completesgAB operon transcriptional regulatory protein6e-0961.6
NC_015968:1709680:171782617178261718476651Enterobacter asburiae LF7a chromosome, complete genomeLuxR family transcriptional regulator7e-0961.2
NC_014314:1485500:150406915040691504752684Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeLuxR family two component transcriptional regulator7e-0961.2
NC_016631:4423658:443437744343774435015639Granulicella mallensis MP5ACTX8 chromosome, complete genometwo component transcriptional regulator, LuxR family1e-0860.8
NC_014562:2563466:257057225705722571219648Pantoea vagans C9-1 chromosome, complete genomeNitrate/nitrite response regulator protein1e-0860.8
NC_016514:1701273:170763317076331708367735Enterobacter cloacae EcWSU1 chromosome, complete genomeCsgBAC operon transcriptional regulatory protein8e-0960.8
NC_011080:2342672:234847423484742349121648Salmonella enterica subsp. enterica serovar Newport str. SL254,nitrate/nitrite response regulator protein NarP1e-0860.5
NC_011205:2462025:246784324678432468490648Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853transcriptional regulator NarP1e-0860.5
NC_011294:2334979:234079723407972341444648Salmonella enterica subsp. enterica serovar Enteritidis strtranscriptional regulator NarP1e-0860.5
NC_003197:2327474:234670223467022347349648Salmonella typhimurium LT2, complete genomeresponse regulator1e-0860.5
NC_011083:2375061:239428223942822394929648Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,nitrate/nitrite response regulator protein NarP1e-0860.5
NC_010102:683444:698474698474699121648Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0860.5
NC_006905:2355290:236098623609862361633648Salmonella enterica subsp. enterica serovar Choleraesuis strresponse regulator in two-component regulatory system with NarQ (or NarX)1e-0860.5
NC_016810:2325190:234441823444182345065648Salmonella enterica subsp. enterica serovar Typhimurium strnitrate/nitrite response regulator protein NarP1e-0860.5
NC_016856:2379027:239825523982552398902648Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Stranscriptional regulator NarP1e-0860.5
NC_016860:2323017:234224523422452342892648Salmonella enterica subsp. enterica serovar Typhimurium strtranscriptional regulator NarP1e-0860.5
NC_016863:2324293:234644723464472347094648Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1transcriptional regulator NarP1e-0860.5
NC_006177:520055:533611533611534207597Symbiobacterium thermophilum IAM 14863, complete genometwo-component response regulator1e-0860.5
NC_008321:2649781:265542726554272656092666Shewanella sp. MR-4, complete genometwo component transcriptional regulator, LuxR family2e-0860.1
NC_011274:2325840:233168123316812332304624Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transcriptional regulator NarP2e-0860.1
NC_008322:2716676:272338927233892724054666Shewanella sp. MR-7, complete genometwo component transcriptional regulator, LuxR family2e-0860.1
NC_008044:857759:869373869373869987615Silicibacter sp. TM1040, complete genometwo component transcriptional regulator, LuxR family1e-0860.1
NC_008148:1567703:156992315699231570585663Rubrobacter xylanophilus DSM 9941, complete genometwo component transcriptional regulator, LuxR family2e-0859.7
NC_016857:2325190:234434923443492345065717Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74nitrate/nitrite response regulator protein NarP2e-0859.7
NC_017046:2324554:234371323437132344429717Salmonella enterica subsp. enterica serovar Typhimurium str. 798nitrate/nitrite response regulator protein NarP2e-0859.7
NC_004631:685357:700413700413701060648Salmonella enterica subsp. enterica serovar Typhi Ty2, completenitrate/nitrite response regulator protein2e-0859.7
NC_003198:2297837:230365323036532304300648Salmonella enterica subsp. enterica serovar Typhi str. CT18,nitrate/nitrite response regulator protein NarP2e-0859.7
NC_006511:682863:697919697919698566648Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCnitrate/nitrite response regulator protein NarP2e-0859.7
NC_011149:2294500:229818522981852298832648Salmonella enterica subsp. enterica serovar Agona str. SL483,nitrate/nitrite response regulator protein NarP2e-0859.7
NC_011094:2348491:235248023524802353127648Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator NarP2e-0859.7
NC_011147:682897:697858697858698505648Salmonella enterica subsp. enterica serovar Paratyphi A strtranscriptional regulator NarP2e-0859.7
NC_016832:687000:700367700367701014648Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Nitrate/nitrite response regulator protein NarP2e-0859.7
NC_013716:1178383:119993311999331200583651Citrobacter rodentium ICC168, complete genomeprobable CsgAB operon transcriptional regulator2e-0859.7
NC_012125:1517925:153298115329811533697717Salmonella enterica subsp. enterica serovar Paratyphi C straintranscriptional regulator NarP3e-0859.3
NC_014958:514225:518259518259518909651Deinococcus maricopensis DSM 21211 chromosome, complete genometwo component LuxR family transcriptional regulator3e-0859.3
NC_015065:18189:387313873139354624Acidobacterium sp. MP5ACTX9 plasmid pACIX902, complete sequencetwo component transcriptional regulator, LuxR family4e-0858.9
NC_016831:687549:702146702146702709564Salmonella enterica subsp. enterica serovar Gallinarum/pullorumnitrate/nitrite response regulator protein NarP5e-0858.5
NC_005125:4283345:429527242952724295949678Gloeobacter violaceus PCC 7421, complete genometwo-component response regulator5e-0858.2
NC_007795:1922000:197296219729621973591630Staphylococcus aureus subsp. aureus NCTC 8325, complete genomeDNA-binding response regulator VraR, putative6e-0858.2
NC_007204:696972:717103717103717762660Psychrobacter arcticus 273-4, complete genomenitrate/nitrite response regulator, possibly NarL8e-0857.8
NC_008025:1799106:181593418159341816599666Deinococcus geothermalis DSM 11300, complete genometwo component transcriptional regulator, LuxR family1e-0757.4
NC_014966:431342:437322437322437960639Vibrio vulnificus MO6-24/O chromosome II, complete sequenceVpsT family transcripitonal regulator1e-0757
NC_004460:1718088:172404117240411724706666Vibrio vulnificus CMCP6 chromosome II, complete sequenceDNA-binding HTH domain-containing protein1e-0757
NC_005140:444353:449333449333450007675Vibrio vulnificus YJ016 chromosome II, complete sequenceDNA-binding HTH domain-containing protein1e-0757
NC_003198:1117687:114002711400271140653627Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative regulatory protein2e-0756.6
NC_013282:551219:556487556487557143657Cronobacter turicensis, complete genomePutative HTH-type transcriptional regulator yhjB2e-0756.6
NC_004547:2285092:230556023055602306210651Erwinia carotovora subsp. atroseptica SCRI1043, complete genomenitrate/nitrite response regulator2e-0756.2
NC_008610:1068429:108364410836441084273630Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica),two component transcriptional regulator, LuxR family2e-0756.2
NC_014532:2108897:211054621105462111229684Halomonas elongata DSM 2581, complete genometwo component transcriptional regulator, LuxR family2e-0756.2
NC_008314:1465643:1487752148775214905262775Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator, LuxR-family3e-0755.8
NC_009512:3251545:326096232609623261582621Pseudomonas putida F1, complete genomeresponse regulator receiver protein4e-0755.5
NC_019757:3869047:388598738859873886706720Cylindrospermum stagnale PCC 7417, complete genomeresponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain4e-0755.5
NC_008148:2498000:252802925280292528718690Rubrobacter xylanophilus DSM 9941, complete genometwo component transcriptional regulator, LuxR family4e-0755.5
NC_003272:2560329:256736625673662567995630Nostoc sp. PCC 7120, complete genometwo-component response regulator4e-0755.5
NC_009465:938378:950758950758951387630Candidatus Vesicomyosocius okutanii HA, complete genometwo-component system, nitrate/nitrite response regulator3e-0755.5
NC_019757:2243796:224509122450912245771681Cylindrospermum stagnale PCC 7417, complete genomeresponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain6e-0755.1
NC_014532:2989185:300977930097793010444666Halomonas elongata DSM 2581, complete genometwo component transcriptional regulator, LuxR family5e-0755.1
NC_009523:585367:6023956023956038101416Roseiflexus sp. RS-1 chromosome, complete genomeresponse regulator receiver protein5e-0755.1
NC_006905:3717306:373803137380313738588558Salmonella enterica subsp. enterica serovar Choleraesuis strputative transcriptional regulator (LuxR/UhpA familiy)5e-0755.1
NC_010994:57362:752167521675998783Rhizobium etli CIAT 652, complete genomeprobable transcriptional regulator protein, LuxR family5e-0755.1
NC_013714:570329:590785590785591477693Bifidobacterium dentium Bd1, complete genomeTwo-component response regulator4e-0755.1
NC_007761:57199:709957099571777783Rhizobium etli CFN 42, complete genomeprobable transcriptional regulator protein, LuxR family6e-0754.7
NC_011593:1830500:184910518491051849974870Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,two component transcriptional regulator, LuxR family1e-0654.3
NC_017219:1830353:184889518488951849764870Bifidobacterium longum subsp. infantis ATCC 15697, complete genometwo-component response regulator1e-0654.3
NC_013235:593289:606074606074606721648Nakamurella multipartita DSM 44233, complete genometwo component transcriptional regulator, LuxR family9e-0754.3
NC_017033:2758582:2759804275980427625362733Frateuria aurantia DSM 6220 chromosome, complete genomeATP-dependent transcriptional regulator9e-0754.3
NC_009620:1307932:131969113196911320470780Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequencetwo component LuxR family transcriptional regulator1e-0653.9
NC_014363:114239:142838142838143575738Olsenella uli DSM 7084 chromosome, complete genometranscriptional regulator, LuxR family1e-0653.9
NC_004337:3621985:364145236414523642054603Shigella flexneri 2a str. 301, complete genomeputative regulator1e-0653.9
NC_004337:3590323:364145236414523642054603Shigella flexneri 2a str. 301, complete genomeputative regulator1e-0653.9
NC_017328:3655876:367630936763093676911603Shigella flexneri 2002017 chromosome, complete genomeputative HTH-type transcriptional regulator yhjB1e-0653.9
NC_019673:1988853:201189820118982012560663Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, LuxR family1e-0653.5
NC_014837:3126543:314911431491143149746633Pantoea sp. At-9b chromosome, complete genomeLuxR family two component transcriptional regulator2e-0653.5
NC_011958:1121387:112279311227931123554762Rhodobacter sphaeroides KD131 chromosome 2, complete genomeTwo component transcriptional regulator, LuxR family2e-0653.1
NC_019897:4014485:403886740388674039592726Thermobacillus composti KWC4 chromosome, complete genomeresponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain2e-0653.1
NC_009050:811358:812764812764813525762Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequencetwo component transcriptional regulator, LuxR family2e-0653.1
NC_016943:3270308:331886433188643319514651Blastococcus saxobsidens DD2, complete genomeResponse regulator containing a CheY-like receiver domain and an HTH DNA-binding domain2e-0653.1
NC_018750:1591895:160845116084511609095645Streptomyces venezuelae ATCC 10712, complete genomeputative two-component system response regulator2e-0653.1
NC_007794:2839239:284279828427982843421624Novosphingobium aromaticivorans DSM 12444, complete genometwo component transcriptional regulator, LuxR family2e-0653.1
NC_020453:6821500:682672568267256827705981Agromonas oligotrophica S58 DNA, complete genomeLuxR family transcriptional regulator2e-0653.1
NC_011886:4336417:436117643611764361868693Arthrobacter chlorophenolicus A6, complete genometwo component transcriptional regulator, LuxR family3e-0652.4
NC_008260:2442000:246057324605732461223651Alcanivorax borkumensis SK2, complete genometranscriptional regulatory protein degu (protease production enhancer protein).3e-0652.4
NC_003078:671000:717545717545718369825Sinorhizobium meliloti 1021 plasmid pSymB, complete sequenceputative response regulator protein3e-0652.4
NC_013595:606096:619003619003619659657Streptosporangium roseum DSM 43021, complete genomeresponse regulator receiver protein3e-0652.4
NC_009439:4404942:442114544211454421795651Pseudomonas mendocina ymp, complete genometwo component LuxR family transcriptional regulator3e-0652.4
NC_014147:765941:769906769906770562657Moraxella catarrhalis RH4 chromosome, complete genometwo-component system nitrate/nitrite response regulator NarL4e-0652
NC_015675:3046852:306292830629283063701774Mesorhizobium opportunistum WSM2075 chromosome, complete genomeLuxR family transcriptional regulator5e-0652
NC_013205:526281:573068573068573763696Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,two component transcriptional regulator, LuxR family5e-0652
NC_015379:4249238:4268700426870042701301431Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative response regulator, NarL family6e-0651.6
NC_015389:175406:190783190783191463681Coriobacterium glomerans PW2 chromosome, complete genometwo component transcriptional regulator, LuxR family5e-0651.6
NC_013729:4835452:484012948401294840815687Kribbella flavida DSM 17836, complete genometwo component transcriptional regulator, LuxR family5e-0651.6
NC_008254:102465:122150122150122806657Mesorhizobium sp. BNC1, complete genometwo component transcriptional regulator, LuxR family6e-0651.2
NC_010572:188500:209287209287209964678Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative two-component system response regulator7e-0651.2
NC_015953:6212366:624157962415796242253675Streptomyces sp. SirexAA-E chromosome, complete genomeLuxR family two component transcriptional regulator8e-0651.2
NC_016114:3275004:328292532829253283557633Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeLuxR family transcriptional regulator8e-0651.2
NC_011420:3822765:3835639383563938383622724Rhodospirillum centenum SW, complete genometranscriptional regulator, LuxR family protein8e-0650.8
NC_015733:1398083:141923114192311419881651Pseudomonas putida S16 chromosome, complete genometwo component LuxR family transcriptional regulator1e-0550.8