Query: NC_008380:855246 Rhizobium leguminosarum bv. viciae 3841, complete genome
Start: 855246, End: 894137, Length: 38892
Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria
General Information: This biovar nodulates legumes in the Tribe Viciae (Vicia, Pisum, Lathyrus, Lens). This strain is a spontaneous streptomycin-resistant mutant of strain 300. Nitrogen-fixing plant symbiont. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_007762:88979 | 88979 | 114840 | 25862 | Rhizobium etli CFN 42 plasmid p42a, complete sequence | 0 | 1051 | BLASTN svg | BLASTP svg |
NC_002678:4885790 | 4885790 | 4933870 | 48081 | Mesorhizobium loti MAFF303099, complete genome | 7e-39 | 170 | BLASTN svg | BLASTP svg |
NC_020453:6821500 | 6821500 | 6854388 | 32889 | Agromonas oligotrophica S58 DNA, complete genome | 4e-25 | 125 | BLASTN svg | BLASTP svg |
NC_014217:4550544 | 4550544 | 4589157 | 38614 | Starkeya novella DSM 506 chromosome, complete genome | 1e-24 | 123 | BLASTN svg | BLASTP svg |
NC_008043:86470* | 86470 | 108480 | 22011 | Silicibacter sp. TM1040 mega plasmid, complete sequence | 2e-20 | 109 | BLASTN svg | BLASTP svg |
NC_008702:2942246* | 2942246 | 2969099 | 26854 | Azoarcus sp. BH72, complete genome | 2e-17 | 99.6 | BLASTN svg | BLASTP svg |
NC_003047:3360000 | 3360000 | 3418599 | 58600 | Sinorhizobium meliloti 1021, complete genome | 3e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_014355:3435343 | 3435343 | 3461466 | 26124 | Candidatus Nitrospira defluvii, complete genome | 5e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_018691:1864796* | 1864796 | 1904453 | 39658 | Alcanivorax dieselolei B5 chromosome, complete genome | 2e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_008347:3034100 | 3034100 | 3059164 | 25065 | Maricaulis maris MCS10, complete genome | 1e-09 | 73.8 | BLASTN svg | BLASTP svg |
NC_014931:5088125* | 5088125 | 5122721 | 34597 | Variovorax paradoxus EPS chromosome, complete genome | 5e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_008782:3167440 | 3167440 | 3222165 | 54726 | Acidovorax sp. JS42, complete genome | 5e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_010125:2884762* | 2884762 | 2945599 | 60838 | Gluconacetobacter diazotrophicus PAl 5, complete genome | 2e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_011770:2046490* | 2046490 | 2070503 | 24014 | Pseudomonas aeruginosa LESB58, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_008463:2017607* | 2017607 | 2043607 | 26001 | Pseudomonas aeruginosa UCBPP-PA14, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_002516:3519000 | 3519000 | 3545074 | 26075 | Pseudomonas aeruginosa PAO1, complete genome | 3e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_012559:2663747* | 2663747 | 2714011 | 50265 | Laribacter hongkongensis HLHK9, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_011757:1121262 | 1121262 | 1140882 | 19621 | Methylobacterium chloromethanicum CM4, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_007492:4563981 | 4563981 | 4589496 | 25516 | Pseudomonas fluorescens PfO-1, complete genome | 5e-06 | 61.9 | BLASTN svg | BLASTP svg |