Pre_GI: BLASTN Hits

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Query: NC_008268:7180663 Rhodococcus sp. RHA1, complete genome

Start: 7180663, End: 7221881, Length: 41219

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013131:7401253*7401253742304021788Catenulispora acidiphila DSM 44928, complete genome01007BLASTN svgBLASTP svg
NC_007777:25434752543475256518621712Frankia sp. CcI3, complete genome0731BLASTN svgBLASTP svg
NC_008278:2813362*2813362285431440953Frankia alni ACN14a, complete genome2e-116428BLASTN svgBLASTP svg
NC_015312:3675148*3675148374606470917Pseudonocardia dioxanivorans CB1190 chromosome, complete genome5e-111410BLASTN svgBLASTP svg
NC_008268:31628243162824318727124448Rhodococcus sp. RHA1, complete genome4e-90341BLASTN svgBLASTP svg
NC_010571:2423732*2423732244807724346Opitutus terrae PB90-1, complete genome1e-37167BLASTN svgBLASTP svg
NC_015434:23754392375439239859923161Verrucosispora maris AB-18-032 chromosome, complete genome1e-34157BLASTN svgBLASTP svg
NC_014761:41737741737743812520749Oceanithermus profundus DSM 14977 chromosome, complete genome1e-34157BLASTN svgBLASTP svg
NC_003888:40312994031299405409922801Streptomyces coelicolor A3(2), complete genome2e-30143BLASTN svgBLASTP svg
NC_013530:42354042354044649822959Xylanimonas cellulosilytica DSM 15894, complete genome2e-30143BLASTN svgBLASTP svg
NC_020302:2677617*2677617270009922483Corynebacterium halotolerans YIM 70093 = DSM 44683, complete7e-30141BLASTN svgBLASTP svg
NC_018750:37415813741581376849826918Streptomyces venezuelae ATCC 10712, complete genome4e-28135BLASTN svgBLASTP svg
NC_010512:1196616*1196616122450027885Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence4e-28135BLASTN svgBLASTP svg
NC_008544:615448*61544864197226525Burkholderia cenocepacia HI2424 chromosome 3, complete sequence4e-28135BLASTN svgBLASTP svg
NC_008060:1544920*1544920156855223633Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence4e-28135BLASTN svgBLASTP svg
NC_008268:34180003418000344059922600Rhodococcus sp. RHA1, complete genome2e-26129BLASTN svgBLASTP svg
NC_013159:38584253858425388459926175Saccharomonospora viridis DSM 43017, complete genome4e-25125BLASTN svgBLASTP svg
NC_019673:359540*35954038271523176Saccharothrix espanaensis DSM 44229 complete genome4e-25125BLASTN svgBLASTP svg
NC_009049:80184*8018410775527572Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence6e-24121BLASTN svgBLASTP svg
NC_015953:34565353456535350619749663Streptomyces sp. SirexAA-E chromosome, complete genome2e-23119BLASTN svgBLASTP svg
NC_015953:3159234*3159234318318823955Streptomyces sp. SirexAA-E chromosome, complete genome9e-23117BLASTN svgBLASTP svg
NC_014666:300571*30057132924028670Frankia sp. EuI1c chromosome, complete genome9e-23117BLASTN svgBLASTP svg
NC_005296:4985991*4985991500948223492Rhodopseudomonas palustris CGA009, complete genome4e-22115BLASTN svgBLASTP svg
NC_015588:47572347572350009924377Isoptericola variabilis 225 chromosome, complete genome1e-21113BLASTN svgBLASTP svg
NC_007958:4541110*4541110456409922990Rhodopseudomonas palustris BisB5, complete genome6e-21111BLASTN svgBLASTP svg
NC_008536:2961460*2961460298496123502Solibacter usitatus Ellin6076, complete genome6e-21111BLASTN svgBLASTP svg
NC_014215:1929000*1929000194714618147Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,2e-20109BLASTN svgBLASTP svg
NC_007925:4756236*4756236477957123336Rhodopseudomonas palustris BisB18, complete genome2e-20109BLASTN svgBLASTP svg
NC_019940:24850002485000250482819829Thioflavicoccus mobilis 8321 chromosome, complete genome9e-20107BLASTN svgBLASTP svg
NC_004463:1520303*1520303154802027718Bradyrhizobium japonicum USDA 110, complete genome9e-20107BLASTN svgBLASTP svg
NC_008380:4532969*4532969455742124453Rhizobium leguminosarum bv. viciae 3841, complete genome1e-18103BLASTN svgBLASTP svg
NC_006087:24392522439252246595526704Leifsonia xyli subsp. xyli str. CTCB07, complete genome6e-18101BLASTN svgBLASTP svg
NC_008686:50750*507507732426575Paracoccus denitrificans PD1222 chromosome 1, complete sequence6e-18101BLASTN svgBLASTP svg
NC_015711:3085038*3085038311227427237Myxococcus fulvus HW-1 chromosome, complete genome6e-18101BLASTN svgBLASTP svg
NC_015740:45083754508375452814119767Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete6e-18101BLASTN svgBLASTP svg
NC_020453:7409402*7409402743330123900Agromonas oligotrophica S58 DNA, complete genome6e-18101BLASTN svgBLASTP svg
NC_015740:2407500*2407500244682739328Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-1799.6BLASTN svgBLASTP svg
NC_013510:262888*26288828309920212Thermomonospora curvata DSM 43183, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_012850:3867743*3867743389224624504Rhizobium leguminosarum bv. trifolii WSM1325, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_011004:5283648*5283648530714923502Rhodopseudomonas palustris TIE-1, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_008095:8198970*8198970822901030041Myxococcus xanthus DK 1622, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_007778:4814000*4814000483709923100Rhodopseudomonas palustris HaA2, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_010125:1651687*1651687167689225206Gluconacetobacter diazotrophicus PAl 5, complete genome9e-1797.6BLASTN svgBLASTP svg
NC_011420:2692857*2692857271509922243Rhodospirillum centenum SW, complete genome9e-1797.6BLASTN svgBLASTP svg
NC_014221:2392150*2392150241624224093Truepera radiovictrix DSM 17093 chromosome, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_010725:39619813961981398401922039Methylobacterium populi BJ001, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_014935:15118351511835153500523171Nitratifractor saLSUginis DSM 16511 chromosome, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_008268:32339613233961325959225632Rhodococcus sp. RHA1, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_003911:3453764*3453764347948625723Silicibacter pomeroyi DSS-3, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_007802:4071006*4071006409812727122Jannaschia sp. CCS1, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_008268:17486351748635177239623762Rhodococcus sp. RHA1, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_009937:4768500*4768500479259924100Azorhizobium caulinodans ORS 571, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_012669:41182304118230414262824399Beutenbergia cavernae DSM 12333, complete genome5e-1591.7BLASTN svgBLASTP svg
NC_015671:32119723211972325530043329Cellvibrio gilvus ATCC 13127 chromosome, complete genome8e-1487.7BLASTN svgBLASTP svg
NC_015514:47793547793550079522861Cellulomonas fimi ATCC 484 chromosome, complete genome8e-1487.7BLASTN svgBLASTP svg
NC_015259:673662*67366271961445953Polymorphum gilvum SL003B-26A1 chromosome, complete genome8e-1487.7BLASTN svgBLASTP svg
NC_013722:75147375147377584224370Xanthomonas albilineans, complete genome8e-1487.7BLASTN svgBLASTP svg
NC_007761:3962474*3962474398568423211Rhizobium etli CFN 42, complete genome8e-1487.7BLASTN svgBLASTP svg
NC_009952:592000*59200063739445395Dinoroseobacter shibae DFL 12, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_011985:3282924*3282924330901226089Agrobacterium radiobacter K84 chromosome 1, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_015259:485015*48501556418379169Polymorphum gilvum SL003B-26A1 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_014151:44973244973248203832307Cellulomonas flavigena DSM 20109 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_009434:2577717*2577717259643418718Pseudomonas stutzeri A1501, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_008027:4953432*4953432497941825987Pseudomonas entomophila L48, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_003305:1297785*1297785132171123927Agrobacterium tumefaciens str. C58 chromosome linear, complete5e-1281.8BLASTN svgBLASTP svg
NC_003063:757999*75799978308325085Agrobacterium tumefaciens str. C58 chromosome linear, complete5e-1281.8BLASTN svgBLASTP svg
NC_002678:2739829*2739829276997330145Mesorhizobium loti MAFF303099, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_007760:1806136*1806136183371527580Anaeromyxobacter dehalogenans 2CP-C, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_007802:179780*17978020828528506Jannaschia sp. CCS1, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_009720:2143124*2143124216762924506Xanthobacter autotrophicus Py2, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_010994:4071131*4071131409424623116Rhizobium etli CIAT 652, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_011145:2543321*2543321257209928779Anaeromyxobacter sp. K, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_011891:2607812*2607812263605028239Anaeromyxobacter dehalogenans 2CP-1, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_014830:335380*33538037339338014Intrasporangium calvum DSM 43043 chromosome, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_018720:17630617630623239356088Bifidobacterium asteroides PRL2011 chromosome, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_004578:895019*89501992169226674Pseudomonas syringae pv. tomato str. DC3000, complete genome8e-1177.8BLASTN svgBLASTP svg
NC_014219:83888*8388810707623189Bacillus selenitireducens MLS10 chromosome, complete genome8e-1177.8BLASTN svgBLASTP svg
NC_003919:1716831*1716831175716240332Xanthomonas axonopodis pv. citri str. 306, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_006085:30856730856732922620660Propionibacterium acnes KPA171202, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_006351:14278814278817240329616Burkholderia pseudomallei K96243 chromosome 2, complete sequence3e-1075.8BLASTN svgBLASTP svg
NC_007435:19811641981164201096229799Burkholderia pseudomallei 1710b chromosome II, complete sequence3e-1075.8BLASTN svgBLASTP svg
NC_009078:142794*14279417264129848Burkholderia pseudomallei 1106a chromosome II, complete sequence3e-1075.8BLASTN svgBLASTP svg
NC_012587:2744731*2744731277030625576Rhizobium sp. NGR234, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_013525:18717951871795190023728443Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_014039:334892*33489235832823437Propionibacterium acnes SK137 chromosome, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_007510:40984340984345009940257Burkholderia sp. 383 chromosome 1, complete sequence1e-0973.8BLASTN svgBLASTP svg
NC_008095:3719441*3719441374439224952Myxococcus xanthus DK 1622, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_013714:24776382477638250276825131Bifidobacterium dentium Bd1, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_014550:2835696*2835696285851122816Arthrobacter arilaitensis Re117, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_015683:22799042279904231865238749Corynebacterium ulcerans BR-AD22 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_020126:39797923979792400548025689Myxococcus stipitatus DSM 14675, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_002932:2142000*2142000216349921500Chlorobium tepidum TLS, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_003047:2798367*2798367282259924233Sinorhizobium meliloti 1021, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_010175:3287500*3287500330660919110Chloroflexus aurantiacus J-10-fl, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_010804:996837996837104668249846Burkholderia multivorans ATCC 17616 chromosome 1, complete5e-0971.9BLASTN svgBLASTP svg
NC_012032:3281869*3281869330162619758Chloroflexus sp. Y-400-fl, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_007644:16122216122218971628495Moorella thermoacetica ATCC 39073, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_008095:6253610*6253610628320829599Myxococcus xanthus DK 1622, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_008268:75763657576365760084724483Rhodococcus sp. RHA1, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_008271:24837124837127209923729Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence2e-0869.9BLASTN svgBLASTP svg
NC_010002:57523635752363577667524313Delftia acidovorans SPH-1, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_011386:763111*76311178777324663Oligotropha carboxidovorans OM5, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_012590:2501593*2501593252409922507Corynebacterium aurimucosum ATCC 700975, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_013715:18862151886215190668320469Rothia mucilaginosa DY-18, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_014121:37769023776902380024423343Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-0869.9BLASTN svgBLASTP svg
NC_014158:14793131479313150261123299Tsukamurella paurometabola DSM 20162 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_015684:3340519*3340519336660926091Oligotropha carboxidovorans OM5 chromosome, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_020260:88230788230791401031704Cronobacter sakazakii Sp291, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_002939:26170372617037264347926443Geobacter sulfurreducens PCA, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_006677:1596560*1596560166542268863Gluconobacter oxydans 621H, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_008254:3246306*3246306327014823843Mesorhizobium sp. BNC1, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_014910:75519275519280336548174Alicycliphilus denitrificans BC chromosome, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_020050:112538625386Cylindrospermum stagnale PCC 7417 plasmid pCYLST.01, partial8e-0867.9BLASTN svgBLASTP svg
NC_020050:41342641342644399930574Cylindrospermum stagnale PCC 7417 plasmid pCYLST.01, partial8e-0867.9BLASTN svgBLASTP svg
NC_007519:33557683355768338139525628Desulfovibrio alaskensis G20 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_008048:38964538964542759937955Sphingopyxis alaskensis RB2256, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_012489:1874415*1874415190141126997Gemmatimonas aurantiaca T-27, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_015161:2018493*2018493204698428492Deinococcus proteolyticus MRP chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_015578:39804963980496402949649001Treponema primitia ZAS-2 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_015738:838715*83871586430625592Eggerthella sp. YY7918, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_009667:1076718*1076718109886222145Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequence1e-0663.9BLASTN svgBLASTP svg
NC_008391:27125427125429909927846Burkholderia cepacia AMMD chromosome 2, complete sequence1e-0663.9BLASTN svgBLASTP svg
NC_008054:1117703*1117703113633218630Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete5e-0661.9BLASTN svgBLASTP svg
NC_008529:11336651133665115246418800Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete5e-0661.9BLASTN svgBLASTP svg
NC_011901:3072817*3072817309809925283Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete5e-0661.9BLASTN svgBLASTP svg
NC_014727:1292213*1292213132033528123Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,5e-0661.9BLASTN svgBLASTP svg
NC_015186:2197236*2197236229649299257Acidiphilium multivorum AIU301, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_019892:81240708124070814363319564Singulisphaera acidiphila DSM 18658 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_007412:14775714775717525527499Anabaena variabilis ATCC 29413 plasmid C, complete sequence5e-0661.9BLASTN svgBLASTP svg