Pre_GI: BLASTP Hits

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Query: NC_008268:7052202:7055444 Rhodococcus sp. RHA1, complete genome

Start: 7055444, End: 7055860, Length: 417

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015312:1265797:129858112985811299459879Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeDNA protecting protein DprA2e-25114
NC_021177:6127431:6129765612976561308141050Streptomyces fulvissimus DSM 40593, complete genomeDNA processing Smf-family protein2e-25114
NC_008699:2418722:2419839241983924208881050Nocardioides sp. JS614, complete genomeDNA protecting protein DprA1e-24111
NC_016788:1509943:1518248151824815193991152Corynebacterium diphtheriae HC04 chromosome, complete genomehypothetical protein2e-24111
NC_016787:1509831:1514783151478315159341152Corynebacterium diphtheriae HC03 chromosome, complete genomehypothetical protein2e-24111
NC_016786:1519481:1523480152348015246311152Corynebacterium diphtheriae HC01 chromosome, complete genomehypothetical protein2e-24111
NC_016782:1520324:1523215152321515243661152Corynebacterium diphtheriae 241 chromosome, complete genomehypothetical protein2e-24111
NC_016790:1480441:1490742149074214918931152Corynebacterium diphtheriae VA01 chromosome, complete genomehypothetical protein2e-24110
NC_002935:1534889:1534889153488915360401152Corynebacterium diphtheriae NCTC 13129, complete genomehypothetical protein5e-24109
NC_014960:1735786:1790547179054717916591113Anaerolinea thermophila UNI-1, complete genomeputative DNA processing protein2e-21100
NC_017031:1420738:1436279143627914374541176Corynebacterium pseudotuberculosis P54B96 chromosome, completeRossmann-fold nucleotide-binding protein/SMF3e-21100
NC_016781:1408235:1436415143641514375901176Corynebacterium pseudotuberculosis 3/99-5 chromosome, completeRossmann-fold nucleotide-binding protein/SMF4e-21100
NC_014329:1407880:1436477143647714376521176Corynebacterium pseudotuberculosis FRC41 chromosome, completehypothetical protein4e-2199.8
NC_017300:1426975:1433834143383414350091176Corynebacterium pseudotuberculosis 1002 chromosome, completeRossmann-fold nucleotide-binding protein/SMF4e-2199.8
NC_017301:1425293:1436222143622214373971176Corynebacterium pseudotuberculosis C231 chromosome, completeRossmann-fold nucleotide-binding protein/SMF4e-2199.8
NC_017303:1420758:1436300143630014374751176Corynebacterium pseudotuberculosis I19 chromosome, complete genomeRossmann-fold nucleotide-binding protein/SMF4e-2199.8
NC_012440:197728:2123492123492134071059Persephonella marina EX-H1, complete genomeprotein smf (DNA-processing chain A)2e-1994.7
NC_010730:578493:5826215826215836911071Sulfurihydrogenibium sp. YO3AOP1, complete genomeDNA protecting protein DprA4e-1993.2
NC_015573:997629:1014479101447910155881110Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDNA protecting protein DprA8e-1992.4
NC_010572:2216309:2217400221740022187161317Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative DNA processing Smf-family protein7e-1992.4
NC_014377:1060000:1062283106228310633621080Thermosediminibacter oceani DSM 16646 chromosome, complete genomeDNA protecting protein DprA1e-1892
NC_015565:1647554:1647554164755416486451092Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeDNA protecting protein DprA3e-1890.5
NC_010408:79855:659065907543954Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1,putative DNA processing SMF-family protein3e-1890.5
NC_012438:159927:1645131645131655831071Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeDNA protecting protein DprA5e-1889.7
NC_007513:1764739:1788619178861917896861068Synechococcus sp. CC9902, complete genomeSMF protein6e-1889.4
NC_012658:2498087:2498087249808724992441158Clostridium botulinum Ba4 str. 657 chromosome, complete genomeDNA uptake protein1e-1788.2
NC_020291:1437431:1453854145385414549121059Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeDNA protecting protein DprA1e-1685.1
NC_013216:1219775:1239497123949712405971101Desulfotomaculum acetoxidans DSM 771, complete genomeDNA protecting protein DprA2e-1684.7
NC_014314:576465:6619486619486630361089Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeDNA protecting protein DprA2e-1684
NC_016818:1605918:161583616158361616822987Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative Rossmann fold nucleotide-binding protein involved in DNA uptake3e-1684
NC_008312:4555499:4555499455549945566411143Trichodesmium erythraeum IMS101, complete genomeDNA protecting protein DprA5e-1682.8
NC_014721:434501:4426364426364437331098Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeDNA protecting protein dpra7e-1682.4
NC_010003:1360472:140726114072611408253993Petrotoga mobilis SJ95, complete genomeDNA protecting protein DprA2e-1580.9
NC_014815:1686409:168954816895481690285738Micromonospora sp. L5 chromosome, complete genome3e-1580.5
NC_003888:6103534:6106490610649061076381149Streptomyces coelicolor A3(2), complete genomehypothetical protein3e-1580.5
NC_008577:44184:4418444184452001017Shewanella sp. ANA-3 chromosome 1, complete sequenceDNA protecting protein DprA4e-1580.1
NC_009053:1942973:1942973194297319441271155Actinobacillus pleuropneumoniae L20, complete genomeProtein smf (DNA-processing chain A)6e-1579.3
NC_019908:1043401:1045622104562210467641143Brachyspira pilosicoli P43/6/78 chromosome, complete genomeDNA protecting protein DprA1e-1478.2
NC_018607:1865972:1865972186597218672101239Brachyspira pilosicoli B2904 chromosome, complete genomeDNA protecting protein DprA1e-1478.2
NC_009848:1542978:156300915630091563911903Bacillus pumilus SAFR-032, complete genomeSmf family DNA processing protein2e-1477.4
NC_017294:758992:7621257621257632191095Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomeDNA protecting protein DprA3e-1477.4
NC_009749:289695:309012309012309818807Francisella tularensis subsp. holarctica FTA, complete genomeDNA protecting protein DprA3e-1477
NC_007880:290059:309372309372310109738Francisella tularensis subsp. holarctica, complete genome3e-1477
NC_014328:1379437:1396457139645713975571101Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative Smf protein4e-1476.6
NC_011601:846358:864090864090865049960Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein4e-1476.6
NC_015658:319296:327387327387328331945Halopiger xanaduensis SH-6 plasmid pHALXA01, complete sequenceSMF family protein1e-1375.1
NC_016010:1822212:185250718525071853496990Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeRossmann fold nucleotide-binding protein2e-1374.3
NC_016826:929259:931492931492932334843Streptococcus infantarius subsp. infantarius CJ18 chromosome,DprA/SMF protein, putative DNA processingfactor4e-1373.6
NC_013162:811763:8154028154028164961095Capnocytophaga ochracea DSM 7271, complete genomeDNA protecting protein DprA4e-1373.6
NC_013282:3962188:3977295397729539784401146Cronobacter turicensis, complete genomeProtein smf6e-1372.8
NC_010410:3719599:3740583374058337417131131Acinetobacter baumannii AYE, complete genomeputative Rossmann-fold nucleotide-binding protein involved in DNA uptake (Smf)7e-1372.4
NC_008752:5213431:5229981522998152312071227Acidovorax avenae subsp. citrulli AAC00-1, complete genomeDNA protecting protein DprA8e-1372.4
NC_002695:4153394:4167448416744841685721125Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein9e-1372
NC_009495:2571732:2571732257173225728171086Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDNA protecting protein DprA1e-1272
CP002185:3627992:3645405364540536465291125Escherichia coli W, complete genomeDNA protecting protein DprA1e-1272
NC_010611:208268:2082682082682093981131Acinetobacter baumannii ACICU, complete genomepredicted Rossmann fold nucleotide-binding protein2e-1271.6
NC_015422:4822636:4840955484095548420941140Alicycliphilus denitrificans K601 chromosome, complete genomeDNA protecting protein DprA1e-1271.6
NC_017046:2869873:287598728759872876964978Salmonella enterica subsp. enterica serovar Typhimurium str. 798competence protein2e-1271.2
NC_016857:2871689:287724528772452878222978Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative competence protein2e-1271.2
NC_016810:2871689:287724528772452878222978Salmonella enterica subsp. enterica serovar Typhimurium strputative competence protein2e-1271.2
NC_014483:1973233:1995184199518419963711188Paenibacillus polymyxa E681 chromosome, complete genomeSmf protein3e-1270.5
NC_006511:3364448:3382067338206733831911125Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein6e-1269.7
NC_015138:5276857:5295164529516452963751212Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeDNA protecting protein DprA5e-1269.7
NC_014169:515957:523221523221524009789Bifidobacterium longum subsp. longum JDM301 chromosome, completeSMF family protein5e-1269.7
NC_011138:318168:325983325983326870888Alteromonas macleodii 'Deep ecotype', complete genomeSMF protein9e-1268.9
NC_014643:1986440:2000796200079620022801485Rothia dentocariosa ATCC 17931 chromosome, complete genomeDNA protecting protein DprA1e-1168.6
NC_009778:2951207:296554729655472966524978Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-1168.6
NC_012471:1197534:119976711997671200612846Streptococcus equi subsp. equi 4047, complete genomeSMF family protein1e-1168.6
NC_011992:3615517:3632024363202436331841161Acidovorax ebreus TPSY, complete genomeDNA protecting protein DprA2e-1167.8
NC_013199:1407742:142346114234611424276816Lactobacillus rhamnosus Lc 705, complete genomeDNA processing Smf protein / Rossmann fold nucleotide-binding protein for DNA uptake2e-1167.8
NC_013939:1812259:1823583182358318247191137Deferribacter desulfuricans SSM1, complete genomeDNA processing protein A2e-1167.8
NC_014624:2297000:2320474232047423215801107Eubacterium limosum KIST612 chromosome, complete genomeDNA protecting protein DprA4e-1167
NC_008260:125500:1441411441411452021062Alcanivorax borkumensis SK2, complete genomepeptide deformylase, DNA processing protein7e-1165.9
NC_012997:4545875:458510345851034585996894Teredinibacter turnerae T7901, complete genomeSMF protein1e-1065.5
NC_017501:121902:1232701232701244571188Neisseria meningitidis 8013, complete genomeSmf protein (DNA processing chain A)2e-1064.3
NC_017516:123618:1249861249861261791194Neisseria meningitidis H44/76 chromosome, complete genomeputative DNA processing protein DprA3e-1063.9
NC_013016:2041890:2061326206132620625131188Neisseria meningitidis alpha14 chromosome, complete genomeDNA processing protein DprA3e-1063.5
NC_014656:1161188:1172044117204411730601017Bifidobacterium longum subsp. longum BBMN68 chromosome, completesmf family protein5e-1063.2
NC_018145:147759:1477591477591489161158Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completeDNA protecting protein DprA6e-1062.8
NC_010120:2055803:2075239207523920764261188Neisseria meningitidis 053442, complete genomeDNA processing chain A8e-1062.4
NC_017512:2116295:2135729213572921369161188Neisseria meningitidis WUE 2594, complete genomeSmf protein (DNA processing chain A)7e-1062.4
NC_017513:115870:1172381172381184251188Neisseria meningitidis G2136 chromosome, complete genomeputative DNA processing protein DprA7e-1062.4
NC_006526:1202000:1218755121875512199121158Zymomonas mobilis subsp. mobilis ZM4, complete genomeDNA processing chain A1e-0962
NC_017238:272980:304783304783305727945Borrelia afzelii PKo chromosome, complete genomeDNA protecting protein DprA2e-0961.6
NC_013960:2366910:237763323776332378607975Nitrosococcus halophilus Nc4 chromosome, complete genomeSMF family protein4e-0960.5
NC_005835:1773482:1775457177545717764611005Thermus thermophilus HB27, complete genomecompetence protein dprA4e-0960.1
NC_014844:2056943:2061979206197920632981320Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeDNA protecting protein DprA5e-0959.7
NC_007798:301456:3177673177673189031137Neorickettsia sennetsu str. Miyayama, complete genomeputative DNA processing protein DprA9e-0958.9
NC_007645:6500059:653267165326716533372702Hahella chejuensis KCTC 2396, complete genomepredicted Rossmann fold nucleotide-binding protein involved in DNA uptake1e-0858.5
NC_007333:810381:834415834415835383969Thermobifida fusca YX, complete genomesimilar to Rossmann fold nucleotide-binding protein involved in DNA uptake2e-0857.8
NC_016048:2873669:290451629045162905475960Oscillibacter valericigenes Sjm18-20, complete genomeputative smf protein5e-0856.6
NC_010572:4181403:4190954419095441919821029Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein8e-0855.8
NC_009051:1455183:148880314888031489747945Methanoculleus marisnigri JR1, complete genomeSMF family protein1e-0755.5
NC_014910:1734634:174680617468061747702897Alicycliphilus denitrificans BC chromosome, complete genomesmf family protein9e-0855.5
NC_014833:3444550:3455787345578734569291143Ruminococcus albus 7 chromosome, complete genomeSMF family protein1e-0755.1
NC_008710:277207:307652307652308596945Borrelia turicatae 91E135, complete genomeSmf protein2e-0754.7
NC_010673:291679:308358308358309302945Borrelia hermsii DAH, complete genomeSmf protein6e-0753.1
NC_014815:1686409:170300417030041703471468Micromonospora sp. L5 chromosome, complete genomesmf family protein9e-0752.4
NC_015164:2473496:248019924801992481125927Bacteroides salanitronis DSM 18170 chromosome, complete genomeSMF family protein1e-0652