Pre_GI: BLASTP Hits

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Query: NC_008262:297960:318953 Clostridium perfringens SM101, complete genome

Start: 318953, End: 320386, Length: 1434

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:332500:3528513528513542841434Clostridium perfringens str. 13, complete genomehypothetical protein0937
NC_008261:304000:3242133242133256461434Clostridium perfringens ATCC 13124, complete genomeglycosyl transferase, group 1 family protein0937
NC_003366:332500:3503063503063515411236Clostridium perfringens str. 13, complete genomehypothetical protein3e-86319
NC_008261:304000:3216683216683229031236Clostridium perfringens ATCC 13124, complete genomeglycosyl transferase, group 1 family protein3e-86319
NC_008262:297960:3164083164083176431236Clostridium perfringens SM101, complete genometeichuronic acid biosynthesis glycosyl transferase, putative5e-86318
NC_008262:297960:3151063151063163891284Clostridium perfringens SM101, complete genometeichuronic acid biosynthesis glycosyl transferase, putative7e-80298
NC_008261:304000:3203663203663216491284Clostridium perfringens ATCC 13124, complete genomeglycosyl transferase, group 1 family protein7e-80298
NC_003366:332500:3490043490043502871284Clostridium perfringens str. 13, complete genomehypothetical protein7e-80298
NC_011979:1590432:1615167161516716164771311Geobacter sp. FRC-32, complete genometeichuronic acid biosynthesis glycosyl transferase, putative3e-69263
NC_013665:231023:2370312370312382211191Methanocella paludicola SANAE, complete genomehypothetical protein1e-66254
NC_007644:626992:6941026941026969302829Moorella thermoacetica ATCC 39073, complete genomehypothetical protein7e-44178
NC_014618:1752434:1768619176861917706822064Enterobacter cloacae SCF1 chromosome, complete genomefamily 2 glycosyl transferase1e-29130
NC_013406:3329791:3338865333886533414652601Paenibacillus sp. Y412MC10 chromosome, complete genomefamily 2 glycosyl transferase4e-28126
NC_016048:3667890:3697350369735036984321083Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein6e-27122
NC_004129:2234851:2253664225366422558532190Pseudomonas fluorescens Pf-5, complete genomeglycosyl transferase, group 2 family protein1e-26121
NC_015660:296488:3125613125613162323672Geobacillus thermoglucosidasius C56-YS93 chromosome, completefamily 2 glycosyl transferase2e-26120
NC_004129:2234851:2250514225051422525862073Pseudomonas fluorescens Pf-5, complete genomeglycosyl transferase, group 2 family protein6e-26119
NC_012108:2220983:2230382223038222315211140Desulfobacterium autotrophicum HRM2, complete genomeTuaH9e-26118
NC_009348:1475955:1501029150102915043403312Aeromonas salmonicida subsp. salmonicida A449, complete genomeglycosyl transferase, group 2 family protein1e-25118
NC_013665:231023:2357042357042368311128Methanocella paludicola SANAE, complete genomehypothetical protein2e-25117
NC_014839:253961:2707942707942719541161Pantoea sp. At-9b plasmid pPAT9B02, complete sequenceglycosyl transferase group 14e-22106
NC_013061:2247191:2258074225807422592671194Pedobacter heparinus DSM 2366, complete genomeglycosyl transferase group 11e-21105
NC_013385:90331:9406394063952201158Ammonifex degensii KC4, complete genomeglycosyl transferase group 12e-20100
NC_010718:2513917:2542049254204925433531305Natranaerobius thermophilus JW/NM-WN-LF, complete genomehypothetical protein2e-20100
NC_008536:435221:4450214450214476062586Solibacter usitatus Ellin6076, complete genomeamine oxidase7e-2099
NC_014562:469154:4892794892794930403762Pantoea vagans C9-1 chromosome, complete genomePutative teichuronic acid biosynthesis glycosyltransferase tuaH2e-1997.1
NC_015726:2923969:2954310295431029553861077Cupriavidus necator N-1 chromosome 1, complete sequenceglycosyl transferase group 33e-1997.1
NC_016818:633750:6538036538036550111209Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeglycosyltransferase3e-1997.1
NC_011884:1898702:1913560191356019160042445Cyanothece sp. PCC 7425, complete genomeUDP-galactopyranose mutase4e-1996.3
NC_007947:1229807:1246223124622312474851263Methylobacillus flagellatus KT, complete genomehypothetical protein1e-1895.1
NC_015563:1129469:1140235114023511433903156Delftia sp. Cs1-4 chromosome, complete genomefamily 2 glycosyl transferase4e-1893.2
NC_015690:2553837:257068925706892571687999Paenibacillus mucilaginosus KNP414 chromosome, complete genomegroup 1 glycosyl transferase2e-1791.3
NC_016935:3103430:312021031202103121208999Paenibacillus mucilaginosus 3016 chromosome, complete genomegroup 1 glycosyl transferase2e-1791.3
NC_004578:3241618:3262476326247632636601185Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-1790.5
NC_011060:244949:2510422510422522081167Pelodictyon phaeoclathratiforme BU-1, complete genomeglycosyl transferase group 15e-1789.4
NC_015064:1021483:1023260102326010257522493Acidobacterium sp. MP5ACTX9 chromosome, complete genomeUDP-galactopyranose mutase2e-1687.4
NC_013061:2247191:2265893226589322671131221Pedobacter heparinus DSM 2366, complete genomeglycosyl transferase group 13e-1686.7
NC_013093:1909305:1923276192327619253932118Actinosynnema mirum DSM 43827, complete genomeglycosyl transferase family 24e-1686.3
NC_015565:2736500:2745931274593127483422412Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completetype 11 methyltransferase2e-1481.3
NC_011985:3892630:3922188392218839233271140Agrobacterium radiobacter K84 chromosome 1, complete genomeglycosyltransferase protein2e-1480.9
NC_008639:2786447:2814776281477628159421167Chlorobium phaeobacteroides DSM 266, complete genomeglycosyl transferase, group 12e-1480.5
NC_011979:1590432:1616497161649716176181122Geobacter sp. FRC-32, complete genomehypothetical protein3e-1480.1
NC_013851:2441407:2448078244807824491961119Allochromatium vinosum DSM 180 chromosome, complete genomeglycosyltransferase3e-1480.1
NC_004129:2234851:2249414224941422505171104Pseudomonas fluorescens Pf-5, complete genomehypothetical protein6e-1479.3
NC_007503:919808:9300959300959312431149Carboxydothermus hydrogenoformans Z-2901, complete genomehypothetical protein2e-1377.4
NC_013592:713036:7334547334547346621209Dickeya dadantii Ech586, complete genomeglycosyl transferase group 17e-1375.9
NC_008254:3980327:3986412398641239885922181Mesorhizobium sp. BNC1, complete genomeMethyltransferase type 122e-1273.9
NC_015968:2975351:2984133298413329853321200Enterobacter asburiae LF7a chromosome, complete genomegroup 1 glycosyl transferase2e-1273.9
NC_016047:3599095:3614882361488236160751194Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeputative teichuronic acid biosynthesis glycosyl transferase TuaH9e-1272
NC_015565:2736500:2743609274360927447091101Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeglycosyltransferase1e-1172
NC_014618:1752434:1770685177068517717761092Enterobacter cloacae SCF1 chromosome, complete genomeglycosyltransferase1e-1171.6
NC_015660:296488:3096513096513108021152Geobacillus thermoglucosidasius C56-YS93 chromosome, completegroup 1 glycosyl transferase4e-1170.1
NC_007503:919808:9312909312909324501161Carboxydothermus hydrogenoformans Z-2901, complete genomeglycosyl transferase, group 1 family protein6e-1066.2
NC_015663:4906652:4916810491681049195692760Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein8e-1065.5
NC_009454:2663539:2688144268814426892921149Pelotomaculum thermopropionicum SI, complete genomeglycosyltransferase2e-0964.3
NC_016112:3103716:3121644312164431227651122Methylomicrobium alcaliphilum chromosome, complete genomeglycosyl transferase family protein4e-0963.2
NC_015572:1421782:1461168146116814623191152Methylomonas methanica MC09 chromosome, complete genomegroup 1 glycosyl transferase1e-0862
NC_013851:2441407:2451538245153824538442307Allochromatium vinosum DSM 180 chromosome, complete genomemethyltransferase type 121e-0861.6
NC_009051:2365711:2376832237683223780191188Methanoculleus marisnigri JR1, complete genomeglycosyl transferase, group 12e-0860.8
NC_015636:41968:419684196842885918Methanothermococcus okinawensis IH1 chromosome, complete genomegroup 1 glycosyl transferase1e-0758.5
NC_013194:963735:9898549898549910621209Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeglycosyl transferase group 14e-0756.6
NC_008639:378181:3968903968903980171128Chlorobium phaeobacteroides DSM 266, complete genomeglycosyl transferase, group 16e-0755.8