Pre_GI: BLASTP Hits

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Query: NC_008262:2824503:2837147 Clostridium perfringens SM101, complete genome

Start: 2837147, End: 2837449, Length: 303

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010498:1615980:162358916235891623900312Escherichia coli SMS-3-5, complete genomePTS system lactose/cellobiose family IIB subunit3e-24110
CP002185:1727493:173792117379211738232312Escherichia coli W, complete genomePTS system, cellobiose family IIB component3e-24110
CP002516:2361628:236762323676232367934312Escherichia coli KO11, complete genomephosphotransferase system lactose/cellobiose-specific IIB subunit3e-24110
CU928160:1625535:163596316359631636274312Escherichia coli IAI1 chromosome, complete genomeputative cellobiose-specific phosphotransferase enzyme IIB component3e-24110
NC_011415:1715644:172607217260721726383312Escherichia coli SE11 chromosome, complete genomePTS system cellobiose-specific IIB component3e-24110
NC_011741:1625535:163596316359631636274312Escherichia coli IAI1 chromosome, complete genomeputative cellobiose-specific phosphotransferase enzyme IIB component3e-24110
NC_016902:2361628:236762323676232367934312Escherichia coli KO11FL chromosome, complete genomePTS system lactose/cellobiose-specific transporter subunit IIB3e-24110
NC_008563:1651270:166317316631731663484312Escherichia coli APEC O1, complete genomePTS system, cellobiose-specific IIB component3e-24110
NC_009800:1632585:164205316420531642364312Escherichia coli HS, complete genomePTS system, lactose/cellobiose family IIB component4e-24109
NC_014219:192555:196401196401196712312Bacillus selenitireducens MLS10 chromosome, complete genomephosphotransferase system lactose/cellobiose-specific IIB subunit4e-1890.1
NC_012488:2719955:272887527288752729180306Listeria monocytogenes Clip81459, complete genomecellobiose phosphotransferase enzyme IIB component9e-1889
NC_011660:2839201:285040128504012850706306Listeria monocytogenes HCC23 chromosome, complete genomePTS system lichenan-specific transporter subunit IIB9e-1889
NC_002973:2701983:271090327109032711208306Listeria monocytogenes str. 4b F2365, complete genomePTS system, beta-glucoside-specific, IIB component9e-1889
NC_003212:2837366:284754828475482847853306Listeria innocua Clip11262, complete genomehypothetical protein1e-1788.6
NC_013766:171889:183986183986184291306Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein1e-1788.6
NC_013768:171889:183986183986184291306Listeria monocytogenes 08-5923, complete genomehypothetical protein1e-1788.6
NC_013891:2643085:265318026531802653485306Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomePTS system, beta-glucoside-specific, IIB component1e-1788.2
NC_003210:2749538:275760627576062757911306Listeria monocytogenes EGD-e, complete genomehypothetical protein3e-1787
NC_009778:259241:260583260583260897315Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein6e-1785.9
NC_013282:3719500:373649737364973736811315Cronobacter turicensis, complete genomeCellobiose-specific phosphotransferase enzyme IIB component6e-1785.9
NC_020260:263528:264870264870265184315Cronobacter sakazakii Sp291, complete genomecellobiose-specific phosphotransferase enzyme IIB component6e-1785.9
NC_008261:2743942:276488027648802765209330Clostridium perfringens ATCC 13124, complete genomePTS system, lactose/cellobiose-specific IIB component2e-1684
NC_016605:132253:137529137529137843315Pediococcus claussenii ATCC BAA-344 chromosome, complete genomePTS system, Lactose/Cellobiose specific IIB subunit2e-1580.9
NC_013716:4306695:434691043469104347224315Citrobacter rodentium ICC168, complete genomePTS system, cellobiose-specific IIb component4e-1579.7
NC_004088:1387276:139897013989701399317348Yersinia pestis KIM, complete genomePEP-dependent phosphotransferase enzyme IV for cellobiose, arbutin, and salicin7e-1579.3
NC_005810:2739878:275163327516332751980348Yersinia pestis biovar Microtus str. 91001, complete genomeN,N'-diacetylchitobiose-specific PTS system transporter subunit IIB7e-1579.3
NC_008150:2681327:269311726931172693434318Yersinia pestis Antiqua, complete genomePTS system, cellobiose-specific IIB component6e-1579.3
NC_003143:2992295:300408530040853004402318Yersinia pestis CO92, complete genomePTS system, cellobiose-specific IIB component6e-1579.3
NC_008149:1317109:132889913288991329216318Yersinia pestis Nepal516, complete genomePTS system, cellobiose-specific IIB component6e-1579.3
NC_009381:1783886:179203717920371792354318Yersinia pestis Pestoides F chromosome, complete genomePTS system N,N'-diacetylchitobiose-specific transporter subunit IIB6e-1579.3
NC_014029:3047506:305929630592963059613318Yersinia pestis Z176003 chromosome, complete genomePTS system cellobiose-specific transporter subunit IIB6e-1579.3
NC_017154:2999841:300682030068203007137318Yersinia pestis D106004 chromosome, complete genomePTS system cellobiose-specific transporter subunit IIB6e-1579.3
NC_017160:2976683:298427129842712984588318Yersinia pestis D182038 chromosome, complete genomePTS system cellobiose-specific transporter subunit IIB6e-1579.3
NC_017168:2751027:275800627580062758323318Yersinia pestis A1122 chromosome, complete genomePTS system N,N'-diacetylchitobiose-specific transporter subunit IIB6e-1579.3
NC_017265:3063016:306999530699953070312318Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,PTS system cellobiose-specific transporter subunit IIB6e-1579.3
NC_006155:3456488:346346834634683463785318Yersinia pseudotuberculosis IP 32953, complete genomePTS system, cellobiose-specific IIB component9e-1579
NC_010634:3368000:337712533771253377442318Yersinia pseudotuberculosis PB1/+, complete genomephosphotransferase system lactose/cellobiose-specific IIB subunit9e-1579
NC_010465:1273000:128289212828921283209318Yersinia pseudotuberculosis YPIII, complete genomephosphotransferase system lactose/cellobiose-specific IIB subunit9e-1579
NC_009708:1284555:129451312945131294830318Yersinia pseudotuberculosis IP 31758 chromosome, complete genomePTS system N,N'-diacetylchitobiose-specific transporter subunit IIB9e-1579
NC_020181:1344259:134559613455961345907312Enterobacter aerogenes EA1509E, complete genomePTS system, cellobiose-specific IIB component8e-1579
NC_010159:3779129:378888537888853789202318Yersinia pestis Angola, complete genomePTS system, cellobiose-specific IIB component1e-1478.6
NC_010582:1771591:177329017732901773607318Streptococcus pneumoniae CGSP14, complete genomePTS system, IIB component3e-1477
NC_008800:1090000:109008010900801090397318Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB3e-1477
NC_015224:3587500:361237436123743612691318Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB3e-1477
NC_020995:3252500:325769332576933258004312Enterococcus casseliflavus EC20, complete genomehypothetical protein8e-1475.9
NC_019978:2532640:255213725521372552451315Halobacteroides halobius DSM 5150, complete genomephosphotransferase system cellobiose-specific component IIB1e-1375.1
NC_008800:4488112:449114944911494491463315Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,pts system, cellobiose-specific IIB component1e-1375.1
NC_014377:321949:337203337203337511309Thermosediminibacter oceani DSM 16646 chromosome, complete genomephosphotransferase system lactose/cellobiose-specific IIB subunit3e-1373.6
NC_012912:844339:850144850144850461318Dickeya zeae Ech1591, complete genomephosphotransferase system lactose/cellobiose-specific IIB subunit5e-1373.2
NC_015389:114469:122668122668122979312Coriobacterium glomerans PW2 chromosome, complete genomephosphotransferase system lactose/cellobiose-specific IIB subunit3e-1270.5
NC_020291:5409587:542631754263175426616300Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomephosphotransferase system cellobiose-specific component IIB4e-1270.1
NC_014377:1985714:199726619972661997592327Thermosediminibacter oceani DSM 16646 chromosome, complete genomephosphotransferase system lactose/cellobiose-specific IIB subunit5e-1269.7
NC_016641:373623:386847386847387170324Paenibacillus terrae HPL-003 chromosome, complete genomePTS system lichenan-specific transporter subunit IIB3e-1063.9
NC_013203:1406158:140751414075141407828315Atopobium parvulum DSM 20469, complete genomephosphotransferase system lactose/cellobiose- specific IIB subunit3e-1063.9
NC_012912:1200000:121510112151011215406306Dickeya zeae Ech1591, complete genomephosphotransferase system lactose/cellobiose-specific IIB subunit4e-1063.5
NC_016845:2781438:278784727878472788170324Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,lactose/cellobiose-specific PTS family enzyme IIB component6e-1062.8
NC_012731:2739964:274637427463742746697324Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomelactose/cellobiose-specific PTS family enzyme IIB component6e-1062.8
NC_006177:1060428:106793110679311068233303Symbiobacterium thermophilum IAM 14863, complete genomePTS system cellobiose-specific IIB component2e-0961.2
NC_016516:1203000:121318012131801213491312Propionibacterium acnes TypeIA2 P.acn33 chromosome, completePTS system, Lactose/Cellobiose specific IIB subunit5e-0649.7
NC_016512:1211653:122173412217341222045312Propionibacterium acnes TypeIA2 P.acn17 chromosome, completePTS system, Lactose/Cellobiose specific IIB subunit5e-0649.7
NC_014039:1238500:124871012487101249021312Propionibacterium acnes SK137 chromosome, complete genomePTS system, Lactose/Cellobiose specific IIB subunit5e-0649.7
NC_016511:1212282:122236312223631222674312Propionibacterium acnes TypeIA2 P.acn31 chromosome, completePTS system, Lactose/Cellobiose specific IIB subunit5e-0649.7
NC_006085:1234587:124667112466711246982312Propionibacterium acnes KPA171202, complete genomePTS system, lichenan-specific IIB component6e-0649.7