Pre_GI: BLASTP Hits

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Query: NC_008262:2824503:2835774 Clostridium perfringens SM101, complete genome

Start: 2835774, End: 2837126, Length: 1353

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008563:1651270:1661736166173616630581323Escherichia coli APEC O1, complete genomehypothetical protein1e-146520
NC_016902:2361628:2368049236804923693711323Escherichia coli KO11FL chromosome, complete genomePTS system lactose/cellobiose family transporter subunit IIC1e-146520
CP002516:2361628:2368049236804923693711323Escherichia coli KO11, complete genomePTS system, lactose/cellobiose family IIC subunit1e-146520
CP002185:1727493:1736484173648417378061323Escherichia coli W, complete genomePTS system cellobiose-specific IIC component1e-146520
NC_011415:1715644:1724635172463517259571323Escherichia coli SE11 chromosome, complete genomePTS system cellobiose-specific IIC component1e-146519
NC_010498:1615980:1624014162401416253361323Escherichia coli SMS-3-5, complete genomePTS system lactose/cellobiose family IIC subunit2e-146519
CU928160:1625535:1634526163452616358871362Escherichia coli IAI1 chromosome, complete genomeputative phosphotransferase system IIC component3e-146518
NC_011741:1625535:1634526163452616358871362Escherichia coli IAI1 chromosome, complete genomeputative phosphotransferase system IIC component3e-146518
NC_009800:1632585:1640616164061616419291314Escherichia coli HS, complete genomePTS system, lactose/cellobiose family IIC component3e-145515
NC_014219:192555:1947561947561960631308Bacillus selenitireducens MLS10 chromosome, complete genomePTS system, cellobiose-specific IIC subunit9e-71268
NC_013891:2643085:2653623265362326549301308Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomePTS system, beta-glucoside-specific, IIC component1e-70267
NC_003212:2837366:2847990284799028492971308Listeria innocua Clip11262, complete genomehypothetical protein1e-69264
NC_011660:2839201:2848958284895828502651308Listeria monocytogenes HCC23 chromosome, complete genomePTS system lichenan-specific transporter subunit IIC5e-69262
NC_003210:2749538:2758046275804627593531308Listeria monocytogenes EGD-e, complete genomehypothetical protein1e-68261
NC_013766:171889:1825431825431838501308Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein1e-68261
NC_013768:171889:1825431825431838501308Listeria monocytogenes 08-5923, complete genomehypothetical protein1e-68261
NC_002973:2701983:2711343271134327126501308Listeria monocytogenes str. 4b F2365, complete genomePTS system, beta-glucoside-specific, IIC component6e-69261
NC_012488:2719955:2729315272931527306221308Listeria monocytogenes Clip81459, complete genomecellobiose phosphotransferase enzyme IIC component6e-69261
NC_012912:844339:8473148473148486601347Dickeya zeae Ech1591, complete genomePTS system, lactose/cellobiose family IIC subunit7e-63241
NC_016612:361417:3636943636943650311338Klebsiella oxytoca KCTC 1686 chromosome, complete genomePTS system lactose/cellobiose family transporter subunit IIC2e-61236
NC_014334:267409:2893532893532906691317Lactobacillus casei str. Zhang chromosome, complete genomePTS system cellobiose-specific transporter subunit IIC4e-57222
NC_018607:2578433:2578433257843325797791347Brachyspira pilosicoli B2904 chromosome, complete genomePTS system cellobiose-specific transporter subunit IIC1e-56221
NC_010999:252605:2717842717842731001317Lactobacillus casei, complete genomeCellobiose PTS, EIIC8e-57221
NC_018604:233769:2510962510962524421347Brachyspira pilosicoli WesB complete genomePTS system, cellobiose-specific IIC subunit7e-57221
NC_010582:1771591:1771591177159117729461356Streptococcus pneumoniae CGSP14, complete genomephosphotransferase system (PTS) cellobiose-specific, IIC component, putative2e-56220
NC_015389:2030154:2060008206000820613331326Coriobacterium glomerans PW2 chromosome, complete genomePTS system, lactose/cellobiose family IIC subunit5e-56219
NC_020260:1993344:1994687199468719960061320Cronobacter sakazakii Sp291, complete genomePTS system transporter subunit EIIC3e-52206
NC_008800:4488112:4491474449147444927991326Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative phosphotransferase protein2e-52206
NC_009778:1956225:1957712195771219590311320Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein6e-52205
NC_020181:1344259:1344259134425913455811323Enterobacter aerogenes EA1509E, complete genomePTS system, cellobiose-specific IIC component9e-52204
NC_013282:2026083:2071278207127820725971320Cronobacter turicensis, complete genomehypothetical protein1e-51204
NC_014330:1541874:1558233155823315595731341Brachyspira pilosicoli 95/1000 chromosome, complete genomePTS system cellobiose-specific transporter subunit IIC1e-51204
NC_010465:1273000:1283220128322012845811362Yersinia pseudotuberculosis YPIII, complete genomePTS system, lactose/cellobiose family IIC subunit3e-51203
NC_004088:1387276:1399328139932814006891362Yersinia pestis KIM, complete genomePEP-dependent phosphotransferase enzyme II for cellobiose, arbutin, and salicin3e-51203
NC_005810:2739878:2751991275199127533521362Yersinia pestis biovar Microtus str. 91001, complete genomeN,N'-diacetylchitobiose-specific PTS system transporter subunit IIC3e-51203
NC_008149:1317109:1329227132922713305881362Yersinia pestis Nepal516, complete genomePTS system, cellobiose-specific IIC component3e-51203
NC_010159:3779129:3789213378921337905741362Yersinia pestis Angola, complete genomePTS system, cellobiose-specific IIC component3e-51203
NC_003143:2992295:3004413300441330057741362Yersinia pestis CO92, complete genomePTS system, cellobiose-specific IIC component3e-51203
NC_008150:2681327:2693445269344526948061362Yersinia pestis Antiqua, complete genomePTS system, cellobiose-specific IIC component3e-51203
NC_009381:1783886:1790665179066517920261362Yersinia pestis Pestoides F chromosome, complete genomePTS system N,N'-diacetylchitobiose-specific transporter subunit IIC3e-51203
NC_009708:1284555:1294841129484112962021362Yersinia pseudotuberculosis IP 31758 chromosome, complete genomePTS system N,N'-diacetylchitobiose-specific transporter subunit IIC3e-51203
NC_014029:3047506:3059624305962430609851362Yersinia pestis Z176003 chromosome, complete genomePTS system cellobiose-specific transporter subunit IIC3e-51203
NC_017154:2999841:3005448300544830068091362Yersinia pestis D106004 chromosome, complete genomePTS system cellobiose-specific transporter subunit IIC3e-51203
NC_017160:2976683:2984599298459929859601362Yersinia pestis D182038 chromosome, complete genomePTS system cellobiose-specific transporter subunit IIC3e-51203
NC_017168:2751027:2756634275663427579951362Yersinia pestis A1122 chromosome, complete genomePTS system N,N'-diacetylchitobiose-specific transporter subunit IIC3e-51203
NC_017265:3063016:3068623306862330699841362Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,PTS system cellobiose-specific transporter subunit IIC3e-51203
NC_006155:3456488:3462111346211134634571347Yersinia pseudotuberculosis IP 32953, complete genome5e-51202
NC_012925:191501:1972781972781986061329Streptococcus suis P1/7, complete genomesugar phosphotransferase system (PTS), IIC component5e-51202
NC_010634:3368000:3375753337575333771141362Yersinia pseudotuberculosis PB1/+, complete genomePTS system lactose/cellobiose family IIC subunit5e-51202
NC_008800:1090000:1090408109040810917691362Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC5e-51202
NC_013203:1406158:1406158140615814074441287Atopobium parvulum DSM 20469, complete genomePTS system, lactose/cellobiose family IIC subunit3e-51202
NC_015224:3587500:3611002361100236123631362Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC7e-51201
NC_015391:448833:4488334488334501701338Carnobacterium sp. 17-4 chromosome, complete genomeputative phosphotransferase system enzyme IIC permease component2e-50200
NC_008528:331260:3337743337743350751302Oenococcus oeni PSU-1, complete genomecellobiose-specific PTS system IIC component4e-50199
NC_015389:1070500:1090190109019010915151326Coriobacterium glomerans PW2 chromosome, complete genomePTS system, lactose/cellobiose family IIC subunit2e-49197
NC_010674:2185704:2191232219123221924821251Clostridium botulinum B str. Eklund 17B, complete genomePTS system, lactose/cellobiose family IIC component9e-50197
NC_006085:1234587:1246988124698812482561269Propionibacterium acnes KPA171202, complete genomePTS system, cellobiose-specific IIC component2e-48193
NC_020260:263528:2635282635282648531326Cronobacter sakazakii Sp291, complete genomePTS family enzyme IIC component2e-48193
NC_013282:3719500:3736795373679537381531359Cronobacter turicensis, complete genomehypothetical protein3e-48192
NC_009778:259241:2592412592412605451305Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-48192
NC_016516:1203000:1213488121348812147651278Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeputative PTS system, cellobiose-specific IIC component1e-47191
NC_016511:1212282:1222671122267112239481278Propionibacterium acnes TypeIA2 P.acn31 chromosome, completeputative PTS system, cellobiose-specific IIC component1e-47191
NC_016512:1211653:1222042122204212233191278Propionibacterium acnes TypeIA2 P.acn17 chromosome, completeputative PTS system, cellobiose-specific IIC component1e-47191
NC_008525:270310:2716672716672729771311Pediococcus pentosaceus ATCC 25745, complete genomecellobiose-specific PTS system IIC component2e-47190
NC_010582:1771591:1774521177452117757831263Streptococcus pneumoniae CGSP14, complete genomephosphotransferase system cellobiose-specific component IIC4e-47189
NC_014039:1238500:1249027124902712502951269Propionibacterium acnes SK137 chromosome, complete genomeputative PTS system, cellobiose-specific IIC component4e-47189
NC_013716:4306695:4345564434556443468951332Citrobacter rodentium ICC168, complete genomeputative PTS system protein, component EIIc2e-46187
NC_020291:5409587:5424911542491154262751365Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomePTS system, lactose/cellobiose family IIC component2e-45183
NC_018604:233769:2538982538982552381341Brachyspira pilosicoli WesB complete genomePTS system, cellobiose-specific IIC subunit2e-45183
NC_013517:2437574:2437574243757424388871314Sebaldella termitidis ATCC 33386, complete genomePTS system, lactose/cellobiose family IIC subunit5e-45182
NC_015389:616430:6204066204066217551350Coriobacterium glomerans PW2 chromosome, complete genomePTS system, lactose/cellobiose family IIC subunit1e-44181
NC_014377:1985714:1995937199593719972531317Thermosediminibacter oceani DSM 16646 chromosome, complete genomePTS system, lactose/cellobiose family IIC subunit1e-44181
NC_015634:526889:5322735322735336281356Bacillus coagulans 2-6 chromosome, complete genomePTS system, lactose/cellobiose family IIC subunit2e-42173
NC_014377:321949:3375153375153387651251Thermosediminibacter oceani DSM 16646 chromosome, complete genomePTS system, lactose/cellobiose family IIC subunit5e-42172
NC_004668:3156247:3162003316200331633101308Enterococcus faecalis V583, complete genomePTS system, IIC component7e-42172
NC_016023:729843:7405837405837419381356Bacillus coagulans 36D1 chromosome, complete genomePTS system lactose/cellobiose family transporter subunit IIC7e-42171
NC_008800:4488112:4489690448969044909641275Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative cellobiose-specific phosphotransferase2e-41170
NC_020181:1344259:1346077134607713473481272Enterobacter aerogenes EA1509E, complete genomePTS system, cellobiose-specific IIC component4e-40166
NC_020995:3252500:3256404325640432576961293Enterococcus casseliflavus EC20, complete genomePTS system, lactose/cellobiose family IIC component3e-39163
NC_014650:1410790:1417528141752814188831356Geobacillus sp. Y4.1MC1 chromosome, complete genomePTS system, lactose/cellobiose family IIC subunit4e-39162
NC_019978:2532640:2550786255078625521081323Halobacteroides halobius DSM 5150, complete genomePTS system, lactose/cellobiose family IIC component1e-38161
NC_011134:1854868:1875720187572018770241305Streptococcus equi subsp. zooepidemicus str. MGCS10565, completecellobiose permease IIC component CelC1e-38160
NC_018607:1648607:1648607164860716500341428Brachyspira pilosicoli B2904 chromosome, complete genomePTS system diacetylchitobiose-specific transporter subunit EIIC1e-35151
NC_019908:323375:3439953439953454221428Brachyspira pilosicoli P43/6/78 chromosome, complete genomePTS system diacetylchitobiose-specific transporter subunit EIIC7e-36151
NC_018604:1137797:1157144115714411585711428Brachyspira pilosicoli WesB complete genomePTS system diacetylchitobiose-specific transporter subunit EIIC1e-35150
NC_018604:233769:2525392525392538641326Brachyspira pilosicoli WesB complete genomePTS system, cellobiose-specific IIC subunit5e-35149
NC_012912:1200000:1207488120748812087891302Dickeya zeae Ech1591, complete genomePTS system, lactose/cellobiose family IIC subunit3e-34146
NC_015389:114469:1213591213591226541296Coriobacterium glomerans PW2 chromosome, complete genomePTS system, lactose/cellobiose family IIC subunit2e-33144
NC_015389:1977736:1984887198488719862721386Coriobacterium glomerans PW2 chromosome, complete genomePTS system, lactose/cellobiose family IIC subunit1e-31138
NC_013504:1648551:1668639166863916699581320Lactobacillus johnsonii FI9785 chromosome, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probably cellobiose specific9e-32138
NC_012731:2739964:2753906275390627551861281Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomecellobiose-specific PTS family enzyme IIC component7e-32138
NC_016845:2781438:2794316279431627955511236Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,cellobiose-specific PTS family enzyme IIC component4e-31136
NC_012984:2681548:2701047270104727024051359Lactobacillus plantarum JDM1, complete genomecellobiose PTS, EIIC9e-31135
NC_017190:1196356:1225073122507312267791707Bacillus amyloliquefaciens LL3 chromosome, complete genomePTS system, lactose-specific IIB component2e-30134
NC_012857:557911:5737025737025758732172Ralstonia pickettii 12D chromosome 2, complete genomePTS system, lactose/cellobiose family IIC subunit2e-30134
NC_010678:114000:1299081299081320792172Ralstonia pickettii 12J chromosome 2, complete sequencePTS system, lactose/cellobiose family IIC subunit2e-30134
NC_018265:75658:9004390043917221680Melissococcus plutonius DAT561 plasmid 1, complete sequencePTS system, cellobiose-specific IIC component1e-30134
NC_016584:4363382:4364751436475143668952145Desulfosporosinus orientis DSM 765 chromosome, complete genomePTS system lactose/cellobiose family transporter subunit IIC1e-30134
NC_020410:1123121:1152617115261711543141698Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completePTS system lactose-specific EIICB component [Includes: Lactose permease IIC component ; Lactose-specific phosphotransferase enzyme IIB component]3e-30133
NC_017191:2174741:2174741217474121764471707Bacillus amyloliquefaciens XH7 chromosome, complete genomePTS system lichenan-specific transporter subunit IIA3e-30133
NC_017188:2172706:2172706217270621744121707Bacillus amyloliquefaciens TA208 chromosome, complete genomeLacE3e-30133
NC_014727:2010000:2013908201390820152181311Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,cellobiose-specific pts system iic component7e-30132
NC_014551:1279229:1307934130793413096401707Bacillus amyloliquefaciens DSM 7, complete genomeLacE1e-29130
NC_018528:2034000:2053019205301920542661248Lactobacillus helveticus R0052 chromosome, complete genomePTS cellobiose-specific permease component IIC3e-28126
NC_014376:6296:1151311513127721260Clostridium saccharolyticum WM1 chromosome, complete genomeProtein-N(pi)-phosphohistidine--sugar phosphotransferase1e-25117
NC_016641:2291363:2305732230573223069641233Paenibacillus terrae HPL-003 chromosome, complete genomePTS system transporter subunit IIC1e-24114
NC_010334:3040589:3043772304377230458562085Shewanella halifaxensis HAW-EB4, complete genomediguanylate phosphodiesterase7e-21102
NC_016641:373623:3871763871763884351260Paenibacillus terrae HPL-003 chromosome, complete genomePTS system transporter subunit IIC1e-1585.1
NC_006177:1060428:1068252106825210694931242Symbiobacterium thermophilum IAM 14863, complete genomePTS system cellobiose-specific IIC component1e-1584.7