Pre_GI: BLASTP Hits

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Query: NC_008262:2824503:2835407 Clostridium perfringens SM101, complete genome

Start: 2835407, End: 2835724, Length: 318

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019978:2532640:255039025503902550734345Halobacteroides halobius DSM 5150, complete genomephosphotransferase system cellobiose-specific component IIA2e-1684.7
NC_014410:2329838:235151423515142351843330Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,phosphotransferase system PTS lactose/cellobiose-specific IIA subunit2e-1684.3
NC_014650:1410790:141599914159991416310312Geobacillus sp. Y4.1MC1 chromosome, complete genomephosphotransferase system PTS lactose/cellobiose-specific subunit IIA3e-1683.6
NC_016023:729843:743119743119743445327Bacillus coagulans 36D1 chromosome, complete genomePTS system lactose/cellobiose-specific transporter subunit IIA2e-1580.9
NC_015634:526889:530761530761531093333Bacillus coagulans 2-6 chromosome, complete genomephosphotransferase system PTS lactose/cellobiose-specific IIA subunit4e-1580.1
NC_019908:1467000:148826614882661488562297Brachyspira pilosicoli P43/6/78 chromosome, complete genomePTS system transporter subunit IIA5e-1579.7
NC_018607:2375344:239598323959832396303321Brachyspira pilosicoli B2904 chromosome, complete genomePTS system transporter subunit IIA6e-1579.3
NC_020291:5409587:542670654267065427008303Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomephosphotransferase system PTS lactose/cellobiose-specific IIA subunit8e-1475.5
NC_014219:192555:196060196060196383324Bacillus selenitireducens MLS10 chromosome, complete genomephosphotransferase system PTS lactose/cellobiose-specific IIA subunit1e-1375.1
NC_010674:2185704:218949221894922189794303Clostridium botulinum B str. Eklund 17B, complete genomePTS system, Lactose/Cellobiose specific IIA subunit6e-1372.8
NC_013716:4306695:434384643438464344148303Citrobacter rodentium ICC168, complete genomeputative PTS system protein, component IIA3e-1270.5
NC_002973:2701983:271268727126872712989303Listeria monocytogenes str. 4b F2365, complete genomePTS system, beta-glucoside-specific, IIA component2e-1168.2
NC_013891:2643085:265496726549672655269303Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomePTS system, beta-glucoside-specific, IIA component2e-1168.2
NC_003210:2749538:275939027593902759692303Listeria monocytogenes EGD-e, complete genomehypothetical protein2e-1168.2
NC_003212:2837366:284933428493342849636303Listeria innocua Clip11262, complete genomehypothetical protein2e-1168.2
NC_011660:2839201:284861928486192848921303Listeria monocytogenes HCC23 chromosome, complete genomePTS system lichenan-specific transporter subunit IIA2e-1168.2
NC_013766:171889:182204182204182506303Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein2e-1168.2
NC_013768:171889:182204182204182506303Listeria monocytogenes 08-5923, complete genomehypothetical protein2e-1168.2
NC_014551:1279229:130965213096521309966315Bacillus amyloliquefaciens DSM 7, complete genomeLacF2e-1168.2
NC_017190:1196356:122679112267911227105315Bacillus amyloliquefaciens LL3 chromosome, complete genomePTS system lactose-specific transporter subunit IIA2e-1168.2
NC_020995:3252500:325800132580013258330330Enterococcus casseliflavus EC20, complete genomehypothetical protein1e-1168.2
NC_016605:132253:137932137932138255324Pediococcus claussenii ATCC BAA-344 chromosome, complete genomePTS system, Lactose/Cellobiose specific IIA subunit2e-1064.3
NC_010582:1771591:177295617729561773273318Streptococcus pneumoniae CGSP14, complete genomephosphotransferase system (PTS) cellobiose-specific component IIA, putative1e-0961.6
NC_014376:6296:127961279613173378Clostridium saccharolyticum WM1 chromosome, complete genomephosphotransferase system PTS lactose/cellobiose-specific IIA subunit6e-0959.7
NC_016641:2291363:230698523069852307332348Paenibacillus terrae HPL-003 chromosome, complete genomephosphotransferase system PTS lactose/cellobiose-specific IIA subunit5e-0959.7
NC_016641:373623:386416386416386763348Paenibacillus terrae HPL-003 chromosome, complete genomePTS system transporter subunit IIA9e-0958.9
NC_014377:321949:338813338813339178366Thermosediminibacter oceani DSM 16646 chromosome, complete genomephosphotransferase system PTS lactose/cellobiose-specific IIA subunit9e-0958.9
NC_008800:4488112:449283044928304493132303Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative phosphotransferase protein2e-0858.2
NC_016511:1212282:122394512239451224310366Propionibacterium acnes TypeIA2 P.acn31 chromosome, completePTS system, Lactose/Cellobiose specific IIA subunit2e-0857.8
NC_016512:1211653:122331612233161223681366Propionibacterium acnes TypeIA2 P.acn17 chromosome, completePTS system, Lactose/Cellobiose specific IIA subunit2e-0857.8
NC_016516:1203000:121476212147621215127366Propionibacterium acnes TypeIA2 P.acn33 chromosome, completePTS system, Lactose/Cellobiose specific IIA subunit2e-0857.8
NC_014039:1238500:125033412503341250657324Propionibacterium acnes SK137 chromosome, complete genomePTS system, Lactose/Cellobiose specific IIA subunit2e-0857.8
NC_018265:75658:897058970590028324Melissococcus plutonius DAT561 plasmid 1, complete sequencephosphotransferase system PTS protein2e-0857.8
NC_006085:1234587:124829812482981248618321Propionibacterium acnes KPA171202, complete genomePTS cellobiose-specific component IIA7e-0855.8
NC_016845:2781438:278752327875232787837315Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative lactose/cellobiose-specific PTS family enzyme IIA component7e-0855.8
NC_012731:2739964:274605027460502746364315Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative lactose/cellobiose-specific PTS family enzyme IIA component7e-0855.8
NC_012912:1200000:121547512154751215792318Dickeya zeae Ech1591, complete genomephosphotransferase system PTS lactose/cellobiose-specific IIA subunit1e-0755.5
NC_008800:1090000:109322210932221093569348Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA1e-0755.5
NC_009708:1284555:129636912963691296716348Yersinia pseudotuberculosis IP 31758 chromosome, complete genomePTS system N,N'-diacetylchitobiose-specific transporter subunit IIA2e-0755.1
NC_006155:3456488:346158134615813461928348Yersinia pseudotuberculosis IP 32953, complete genomePTS system, cellobiose-specific IIA component2e-0754.7
NC_005810:2739878:275351927535192753866348Yersinia pestis biovar Microtus str. 91001, complete genomeN,N'-diacetylchitobiose-specific PTS system transporter subunit IIA2e-0754.7
NC_008149:1317109:133075513307551331102348Yersinia pestis Nepal516, complete genomePTS system, cellobiose-specific IIA component2e-0754.7
NC_010465:1273000:128474812847481285095348Yersinia pseudotuberculosis YPIII, complete genomephosphotransferase system PTS lactose/cellobiose-specific IIA subunit2e-0754.7
NC_008150:2681327:269497326949732695320348Yersinia pestis Antiqua, complete genomePTS system, cellobiose-specific IIA component2e-0754.7
NC_010634:3368000:337523933752393375586348Yersinia pseudotuberculosis PB1/+, complete genomephosphotransferase system PTS lactose/cellobiose-specific IIA subunit2e-0754.7
NC_004088:1387276:140085614008561401203348Yersinia pestis KIM, complete genomePEP-dependent phosphotransferase IIA component for cellobiose, arbutin, and salicin2e-0754.7
NC_003143:2992295:300594130059413006288348Yersinia pestis CO92, complete genomePTS system, cellobiose-specific IIA component2e-0754.7
NC_009381:1783886:179015117901511790498348Yersinia pestis Pestoides F chromosome, complete genomePTS system N,N'-diacetylchitobiose-specific transporter subunit IIA2e-0754.7
NC_014029:3047506:306115230611523061499348Yersinia pestis Z176003 chromosome, complete genomePTS system cellobiose-specific transporter subunit IIA2e-0754.7
NC_017154:2999841:300493430049343005281348Yersinia pestis D106004 chromosome, complete genomePTS system cellobiose-specific transporter subunit IIA2e-0754.7
NC_017160:2976683:298612729861272986474348Yersinia pestis D182038 chromosome, complete genomePTS system cellobiose-specific transporter subunit IIA2e-0754.7
NC_017168:2751027:275612027561202756467348Yersinia pestis A1122 chromosome, complete genomePTS system N,N'-diacetylchitobiose-specific transporter subunit IIA2e-0754.7
NC_017265:3063016:306810930681093068456348Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,PTS system cellobiose-specific transporter subunit IIA2e-0754.7
NC_015224:3587500:360920236092023609549348Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA2e-0754.3
NC_014377:1985714:199560019956001995917318Thermosediminibacter oceani DSM 16646 chromosome, complete genomephosphotransferase system PTS lactose/cellobiose-specific IIA subunit3e-0753.9
NC_008563:1651270:166139716613971661711315Escherichia coli APEC O1, complete genomePTS system, cellobiose-specific IIA component1e-0652
NC_012917:3241196:329094732909473291270324Pectobacterium carotovorum subsp. carotovorum PC1, complete genomephosphotransferase system PTS lactose/cellobiose-specific IIA subunit2e-0650.8
NC_011741:1625535:163418716341871634501315Escherichia coli IAI1 chromosome, complete genomeputative phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit7e-0649.3
NC_011415:1715644:172429617242961724610315Escherichia coli SE11 chromosome, complete genomePTS system cellobiose-specific IIA component7e-0649.3
CU928160:1625535:163418716341871634501315Escherichia coli IAI1 chromosome, complete genomeputative phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit7e-0649.3
NC_016902:2361628:236939923693992369710312Escherichia coli KO11FL chromosome, complete genomephosphotransferase system PTS lactose/cellobiose-specific IIA subunit7e-0649.3
CP002516:2361628:236939923693992369710312Escherichia coli KO11, complete genomephosphotransferase system PTS lactose/cellobiose-specific IIA subunit7e-0649.3
CP002185:1727493:173614517361451736456312Escherichia coli W, complete genomePTS system cellobiose-specific IIA component7e-0649.3
NC_009800:1632585:164027716402771640588312Escherichia coli HS, complete genomePTS system, lactose/cellobiose-specific family, IIA component8e-0649.3
NC_010498:1615980:162536416253641625675312Escherichia coli SMS-3-5, complete genomePTS system lactose/cellobiose-specific family IIA subunit8e-0649.3