Pre_GI: BLASTP Hits

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Query: NC_008262:2824503:2834857 Clostridium perfringens SM101, complete genome

Start: 2834857, End: 2835111, Length: 255

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015138:2299100:230244723024472302914468Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehypothetical protein2e-0961.2
NC_008752:3511006:352783535278353528302468Acidovorax avenae subsp. citrulli AAC00-1, complete genomeprotein of unknown function DUF1632e-0961.2
NC_009348:1064664:109596810959681096435468Aeromonas salmonicida subsp. salmonicida A449, complete genomerRNA large subunit methyltransferase5e-0960.1
NC_013171:312500:325101325101325583483Anaerococcus prevotii DSM 20548, complete genomeprotein of unknown function DUF1633e-2097.1
NC_017187:422698:425528425528425983456Arcobacter butzleri ED-1, complete genomehypothetical protein4e-0856.6
NC_009850:445000:447887447887448366480Arcobacter butzleri RM4018, complete genomeconserved hypothetical protein (DUF163 domain protein)5e-0856.6
NC_014166:681290:686055686055686516462Arcobacter nitrofigilis DSM 7299 chromosome, complete genomehypothetical protein2e-1271.2
NC_009725:3809403:382510038251003825579480Bacillus amyloliquefaciens FZB42, complete genomeYydA7e-25112
NC_020272:84227:924649246492943480Bacillus amyloliquefaciens IT-45, complete genomerRNA large subunit methyltransferase5e-25112
NC_017190:3879148:391279339127933913272480Bacillus amyloliquefaciens LL3 chromosome, complete genomeribosomal RNA large subunit methyltransferase H7e-25112
NC_019842:3852062:386748138674813867960480Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,rRNA large subunit methyltransferase7e-25112
NC_020410:3801583:381590638159063816385480Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeRibosomal RNA large subunit methyltransferase H1e-24111
NC_017188:3839478:385322238532223853701480Bacillus amyloliquefaciens TA208 chromosome, complete genomerRNA large subunit methyltransferase7e-25112
NC_017191:3841170:385491438549143855393480Bacillus amyloliquefaciens XH7 chromosome, complete genomerRNA large subunit methyltransferase7e-25112
NC_007530:5197854:519891451989145199462549Bacillus anthracis str. 'Ames Ancestor', complete genomehypothetical protein3e-23107
UCMB5137:3601629:361865636186563619135480Bacillus atrophaeus UCMB-5137rRNA large subunit methyltransferase2e-24110
NC_012472:5239944:524100452410045241507504Bacillus cereus 03BB102, complete genomeconserved hypothetical protein TIGR002463e-23107
NC_011658:5239509:524052452405245241027504Bacillus cereus AH187 chromosome, complete genomerRNA large subunit methyltransferase3e-23107
NC_004722:5381208:538329553832955383774480Bacillus cereus ATCC 14579, complete genomehypothetical protein3e-23107
NC_014335:5165211:516708651670865167619534Bacillus cereus biovar anthracis str. CI chromosome, completeputative cytoplasmic protein3e-23107
NC_006274:5267585:527252952725295273077549Bacillus cereus E33L, complete genomehypothetical protein3e-23107
NC_016779:5189139:519439951943995194902504Bacillus cereus F837/76 chromosome, complete genome50S m3Psi1915 methyltransferase RlmH3e-23107
NC_016771:5191937:519295251929525193500549Bacillus cereus NC7401, complete genomehypothetical protein3e-23107
NC_006582:4256915:427346142734614273940480Bacillus clausii KSM-K16, complete genomehypothetical protein2e-21101
NC_016023:1419217:142567614256761426155480Bacillus coagulans 36D1 chromosome, complete genomeribosomal RNA large subunit methyltransferase H2e-24110
NC_006322:4149500:417567341756734176152480Bacillus licheniformis ATCC 14580, complete genomehypothetical protein2e-23107
NC_006270:4149004:417555841755584176037480Bacillus licheniformis ATCC 14580, complete genomehypothetical protein2e-23107
NC_009848:3631243:364258936425893643068480Bacillus pumilus SAFR-032, complete genomeSPOUT methyltransferase superfamily protein4e-24109
NC_014976:2117567:213210521321052132584480Bacillus subtilis BSn5 chromosome, complete genomerRNA large subunit methyltransferase1e-24111
NC_014479:3939183:395827339582733958752480Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative rRNA large subunit methyltransferase3e-24110
NC_016047:4108910:413040641304064130885480Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completehypothetical protein1e-24112
NC_000964:4116104:413346041334604133939480Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein4e-24110
NC_019896:76094:813268132681805480Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein4e-25113
NC_017195:3919000:393908539390853939564480Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completehypothetical protein1e-24111
NC_020244:3961337:397899239789923979471480Bacillus subtilis XF-1, complete genomerRNA large subunit methyltransferase1e-24111
NC_017200:5325977:532699253269925327471480Bacillus thuringiensis serovar finitimus YBT-020 chromosome,rRNA large subunit methyltransferase2e-23107
NC_005957:5203915:520917552091755209723549Bacillus thuringiensis serovar konkukian str. 97-27, completehypothetical protein7e-23105
NC_014932:1232346:123234612323461232828483Bartonella clarridgeiae 73, complete genomehypothetical protein2e-0960.8
NC_010161:205500:231536231536232018483Bartonella tribocorum CIP 105476, complete genomehypothetical protein1e-0858.5
NC_020301:174467:205531205531206013483Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomerRNA large subunit methyltransferase6e-1062.8
NC_014638:183115:186551186551187030480Bifidobacterium bifidum PRL2010 chromosome, complete genomehypothetical protein9e-2199
NC_014616:213118:216554216554217033480Bifidobacterium bifidum S17 chromosome, complete genomeSPOUT methyltransferase1e-2098.6
NC_010084:1054000:107418310741831074653471Burkholderia multivorans ATCC 17616 chromosome 1, completerRNA large subunit methyltransferase1e-1065.1
NC_015136:1141925:116256011625601163030471Burkholderia sp. CCGE1001 chromosome 1, complete sequencehypothetical protein8e-1062.4
NC_012039:185607:187875187875188330456Campylobacter lari RM2100, complete genomeconserved hypothetical protein (DUF163 domain protein)1e-1375.1
NC_013895:1429023:143217514321751432639465Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeputative rRNA large subunit m3Psi methyltransferase RlmH2e-1270.9
NC_021182:4829000:485184848518484852327480Clostridium pasteurianum BC1, complete genomerRNA large subunit m3Psi methyltransferase RlmH8e-30129
NC_008262:2824503:284623028462302846709480Clostridium perfringens SM101, complete genomeconserved hypothetical protein TIGR002461e-36151
NC_014614:2643203:266329326632932663772480Clostridium sticklandii, complete genomehypothetical protein4e-27119
NC_013939:1902397:192036819203681920799432Deferribacter desulfuricans SSM1, complete genomehypothetical protein3e-0753.9
NC_017095:2058921:207777720777772078238462Fervidobacterium pennivorans DSM 9078 chromosome, complete genomehypothetical protein4e-1786.7
NC_016630:1890917:190497319049731905419447Filifactor alocis ATCC 35896 chromosome, complete genomealpha/beta knot family protein3e-1683.6
NC_009328:3504454:351561635156163515906291Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein8e-22102
NC_011979:646518:676675676675677136462Geobacter sp. FRC-32, complete genomeprotein of unknown function DUF1632e-1374.7
NC_006677:1255079:125859412585941259052459Gluconobacter oxydans 621H, complete genomehypothetical protein7e-1062.8
NC_014654:391201:410350410350410829480Halanaerobium sp. 'sapolanicus' chromosome, complete genomeprotein of unknown function DUF1632e-1994.4
NC_011899:2165814:218444821844482184927480Halothermothrix orenii H 168, complete genomeconserved hypothetical protein TIGR002461e-22105
NC_008497:32160:399453994540424480Lactobacillus brevis ATCC 367, complete genomehypothetical protein9e-2095.5
NC_009654:3215205:322634532263453226812468Marinomonas sp. MWYL1, complete genomehypothetical protein3e-1167.4
NC_009135:494949:510246510246510725480Methanococcus maripaludis C5, complete genomeprotein of unknown function DUF1631e-23108
NC_009975:1500978:151545115154511515930480Methanococcus maripaludis C6, complete genomeprotein of unknown function DUF1631e-23108
NC_009637:302881:307860307860308339480Methanococcus maripaludis C7 chromosome, complete genomerRNA large subunit methyltransferase8e-24108
NC_005791:1028500:103051410305141030993480Methanococcus maripaludis S2, complete genomehypothetical protein3e-24110
NC_015847:1119666:112462811246281125107480Methanococcus maripaludis XI chromosome, complete genomerRNA large subunit methyltransferase3e-24110
NC_009634:411599:416728416728417207480Methanococcus vannielii SB chromosome, complete genomerRNA large subunit methyltransferase4e-24109
NC_012803:361127:361127361127361573447Micrococcus luteus NCTC 2665, complete genomeconserved hypothetical protein TIGR002468e-0958.9
NC_019949:631561:646563646563646997435Mycoplasma cynos C142 complete genomeRibosomal RNA large subunit methyltransferase H5e-1786.3
NC_008095:1428665:145236014523601452824465Myxococcus xanthus DK 1622, complete genomehypothetical protein6e-1476.3
NC_014752:324832:325939325939326409471Neisseria lactamica ST-640, complete genomehypothetical protein6e-0959.7
NC_016609:4997414:500283850028385003311474Niastella koreensis GR20-10 chromosome, complete genomeribosomal RNA large subunit methyltransferase H6e-1372.8
NC_014935:836868:848587848587849048462Nitratifractor saLSUginis DSM 16511 chromosome, complete genomehypothetical protein2e-1064.7
NC_015690:8614000:862798886279888628467480Paenibacillus mucilaginosus KNP414 chromosome, complete genomeRlmH4e-22103
NC_013406:7024149:705787270578727058351480Paenibacillus sp. Y412MC10 chromosome, complete genomehypothetical protein1e-1891.7
NC_016641:1530905:154042915404291540908480Paenibacillus terrae HPL-003 chromosome, complete genomehypothetical protein6e-1992.8
NC_005071:671084:686310686310686744435Prochlorococcus marinus str. MIT 9313, complete genomehypothetical protein7e-1062.4
NC_017068:130226:150160150160150639480Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative ribosomal RNA large subunit methyltransferase H1e-1891.7
NC_015437:2354429:235675823567582357237480Selenomonas sputigena ATCC 35185 chromosome, complete genomeConserved hypothetical protein CHP002461e-1788.2
NC_003047:3419212:344590634459063446451546Sinorhizobium meliloti 1021, complete genomehypothetical protein6e-1476.3
NC_010162:5129270:514376351437635144200438Sorangium cellulosum 'So ce 56', complete genomehypothetical protein3e-1477
NC_007622:16000:339183391834397480Staphylococcus aureus RF122, complete genomehypothetical protein6e-2095.9
NC_017351:15413:336683366834147480Staphylococcus aureus subsp. aureus 11819-97 chromosome, completerRNA large subunit m3Psi methyltransferase RlmH6e-2095.9
NC_017343:16000:336923369234171480Staphylococcus aureus subsp. aureus ECT-R 2, complete genomehypothetical protein6e-2095.9
NC_009632:16238:338163381634295480Staphylococcus aureus subsp. aureus JH1 chromosome, completerRNA large subunit methyltransferase6e-2095.9
NC_009487:16169:337473374734226480Staphylococcus aureus subsp. aureus JH9 chromosome, completerRNA large subunit methyltransferase6e-2095.9
NC_017338:14886:331443314433623480Staphylococcus aureus subsp. aureus JKD6159 chromosome, completerRNA large subunit methyltransferase7e-2095.9
NC_016928:16869:344293442934908480Staphylococcus aureus subsp. aureus M013 chromosome, completeLSU m3Psi1915 methyltransferase RlmH ybeA6e-2095.9
NC_002952:15405:336603366034139480Staphylococcus aureus subsp. aureus MRSA252, complete genomehypothetical protein6e-2095.9
NC_016941:14658:336133361334092480Staphylococcus aureus subsp. aureus MSHR1132, complete genomeribosomal RNA large subunit methyltransferase H6e-2095.9
NC_002953:15416:336893368934168480Staphylococcus aureus subsp. aureus MSSA476, complete genomehypothetical protein5e-2096.3
NC_009782:16000:336933369334172480Staphylococcus aureus subsp. aureus Mu3, complete genomeconserved hypothetical protein orfX6e-2095.9
NC_003923:15416:336893368934168480Staphylococcus aureus subsp. aureus MW2, complete genomehypothetical protein5e-2096.3
NC_002745:16000:336923369234171480Staphylococcus aureus subsp. aureus N315, complete genomeconserved hypothetical protein orfX6e-2095.9
NC_007795:15414:336913369134170480Staphylococcus aureus subsp. aureus NCTC 8325, complete genomehypothetical protein6e-2095.9
NC_017341:14970:331453314533624480Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,rRNA large subunit methyltransferase6e-2095.9
NC_017347:16000:335773357734056480Staphylococcus aureus subsp. aureus T0131 chromosome, completeribosomal RNA large subunit methyltransferase H6e-2095.9
NC_017342:483359:486297486297486776480Staphylococcus aureus subsp. aureus TCH60 chromosome, completealpha/beta knot family protein6e-2095.9
NC_007793:15441:337123371234191480Staphylococcus aureus subsp. aureus USA300, complete genomeconserved hypothetical protein OrfX6e-2095.9
NC_010079:15441:337123371234191480Staphylococcus aureus subsp. aureus USA300_TCH1516, completehypothetical protein OrfX6e-2095.9
NC_016912:15414:336913369134170480Staphylococcus aureus subsp. aureus VC40 chromosome, completerRNA large subunit methyltransferase6e-2096.3
NC_004461:1:320313203132510480Staphylococcus epidermidis ATCC 12228, complete genomehypothetical protein6e-2199.4
NC_002976:2580485:258417625841762584655480Staphylococcus epidermidis RP62A, complete genomehypothetical protein6e-2199.4
NC_007168:16431:293022930229781480Staphylococcus haemolyticus JCSC1435, complete genomehypothetical protein4e-2096.7
NC_014623:2283253:230070323007032301062360Stigmatella aurantiaca DW4/3-1 chromosome, complete genomehypothetical protein2e-1478.2
NC_013515:1125739:112653411265341126998465Streptobacillus moniliformis DSM 12112, complete genomeprotein of unknown function DUF1636e-1579.7
NC_007516:1086948:110953511095351109969435Synechococcus sp. CC9605, complete genomehypothetical protein3e-1167
NC_019897:128610:144436144436144915480Thermobacillus composti KWC4 chromosome, complete genomerRNA large subunit m3Psi methyltransferase RlmH1e-1891.7
NC_009616:183772:195027195027195485459Thermosipho melanesiensis BI429 chromosome, complete genomehypothetical protein2e-1477.8
NC_016148:951446:969848969848970312465Thermovirga lienii DSM 17291 chromosome, complete genomehypothetical protein6e-1062.8
NC_015759:726612:726612726612727091480Weissella koreensis KACC 15510 chromosome, complete genomerRNA large subunit methyltransferase1e-1685.1
NC_013722:2919560:294256429425642943034471Xanthomonas albilineans, complete genomehypothetical protein7e-1062.4