Pre_GI: BLASTP Hits

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Query: NC_008262:2498000:2512436 Clostridium perfringens SM101, complete genome

Start: 2512436, End: 2513074, Length: 639

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010674:370629:380146380146380778633Clostridium botulinum B str. Eklund 17B, complete genomeredox-sensing transcriptional repressor rex1e-78292
NC_010723:371741:375524375524376156633Clostridium botulinum E3 str. Alaska E43, complete genomeredox-sensing transcriptional repressor rex2e-78291
NC_009617:385000:386403386403387038636Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeredox-sensing transcriptional repressor Rex8e-78289
NC_020291:491000:500649500649501284636Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeredox-sensing transcriptional repressor Rex1e-77288
NC_004557:2552418:256762825676282568263636Clostridium tetani E88, complete genomeredox-sensing transcriptional repressor Rex1e-75282
NC_012563:3729817:375944237594423760074633Clostridium botulinum A2 str. Kyoto, complete genometranscriptional regulator, Rex family2e-74278
NC_009495:3502000:351737235173723518004633Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeredox-sensing transcriptional repressor Rex2e-74278
NC_009697:3463736:349336034933603493992633Clostridium botulinum A str. ATCC 19397 chromosome, completeredox-sensing transcriptional repressor Rex2e-74278
NC_009699:3581376:361100336110033611635633Clostridium botulinum F str. Langeland chromosome, complete genomeredox-sensing transcriptional repressor Rex2e-74278
NC_017297:3594000:360961736096173610249633Clostridium botulinum F str. 230613 chromosome, complete genometranscriptional regulator, Rex family2e-74278
NC_010520:3580000:359457635945763595208633Clostridium botulinum A3 str. Loch Maree, complete genometranscriptional regulator, Rex family4e-74277
NC_014393:3650957:366373136637313664354624Clostridium cellulovorans 743B chromosome, complete genomeCoA-binding domain-containing protein3e-73274
NC_021182:1473535:147827514782751478916642Clostridium pasteurianum BC1, complete genomeAT-rich DNA-binding protein1e-72272
NC_014377:669216:687535687535688167633Thermosediminibacter oceani DSM 16646 chromosome, complete genomeCoA-binding domain protein3e-39161
NC_016048:2055199:205908420590842059713630Oscillibacter valericigenes Sjm18-20, complete genomeredox-sensing transcriptional repressor Rex2e-38158
NC_015873:1119500:111953511195351120170636Megasphaera elsdenii DSM 20460, complete genomeredox-sensing transcriptional repressor rex3e-37154
NC_014654:391201:408863408863409510648Halanaerobium sp. 'sapolanicus' chromosome, complete genomeCoA-binding domain protein3e-35148
NC_011899:2165814:218852321885232189170648Halothermothrix orenii H 168, complete genomeredox-sensing transcriptional repressor Rex4e-35147
NC_020995:2636519:265310726531072653853747Enterococcus casseliflavus EC20, complete genomeredox-sensing transcriptional repressor rex 12e-27122
NC_021175:964224:967037967037967684648Streptococcus oligofermentans AS 1.3089, complete genomeredox-sensing transcriptional repressor Rex1e-26119
NC_011567:204772:224680224680225315636Anoxybacillus flavithermus WK1, complete genomeAT-rich DNA-binding protein1e-25115
NC_020272:3325000:334033933403393340986648Bacillus amyloliquefaciens IT-45, complete genomeredox-sensing transcriptional repressor Rex2e-25115
NC_015759:1117122:111977911197791120414636Weissella koreensis KACC 15510 chromosome, complete genomeredox-sensing transcriptional repressor Rex3e-25115
NC_008025:669281:679673679673680368696Deinococcus geothermalis DSM 11300, complete genomeCoA-binding3e-25115
NC_017208:256163:258284258284258913630Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeredox-sensing transcriptional repressor Rex6e-25114
NC_014171:235558:257804257804258433630Bacillus thuringiensis BMB171 chromosome, complete genomeredox-sensing transcriptional repressor Rex6e-25114
NC_014376:869749:882315882315882983669Clostridium saccharolyticum WM1 chromosome, complete genomeCoA-binding domain protein1e-24112
NC_007498:1848437:185937418593741860021648Pelobacter carbinolicus DSM 2380, complete genomeputative DNA-binding protein p259e-23106
NC_006347:4562242:457860545786054579261657Bacteroides fragilis YCH46, complete genomeredox-sensing transcriptional repressor Rex4e-21101
NC_016776:4525065:454473045447304545392663Bacteroides fragilis 638R, complete genomehypothetical protein4e-21101
NC_003228:4449072:446460144646014465263663Bacteroides fragilis NCTC 9343, complete genomeredox-sensing transcriptional repressor Rex4e-21101
NC_013192:171000:172578172578173243666Leptotrichia buccalis DSM 1135, complete genomeRex DNA-binding domain protein6e-1994
NC_014824:133065:138999138999139601603Ruminococcus albus 7 plasmid pRUMAL01, complete sequenceCoA-binding domain protein7e-1994
NC_010999:1381497:140352014035201404173654Lactobacillus casei, complete genomeRedox-sensing transcriptional repressor rex7e-1890.5
NC_015601:1107961:111449311144931115116624Erysipelothrix rhusiopathiae str. Fujisawa, complete genomeredox-sensing transcriptional repressor Rex6e-1787.4