Pre_GI: BLASTP Hits

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Query: NC_008262:227354:238759 Clostridium perfringens SM101, complete genome

Start: 238759, End: 239388, Length: 630

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008261:225425:236809236809237438630Clostridium perfringens ATCC 13124, complete genomehypothetical protein4e-87320
NC_003366:255480:267399267399268028630Clostridium perfringens str. 13, complete genomeprobable acetyltransferase1e-84311
NC_014098:850000:875615875615876289675Bacillus tusciae DSM 2912 chromosome, complete genomesugar O-acyltransferase, sialic acid O- acetyltransferase NeuD family2e-1375.5
NC_016148:1877711:188324718832471883894648Thermovirga lienii DSM 17291 chromosome, complete genomesugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family4e-1168.2
NC_019968:891904:904522904522905166645Prevotella dentalis DSM 3688 chromosome 2, complete sequencehypothetical protein3e-1065.1
NC_014387:497883:549537549537550172636Butyrivibrio proteoclasticus B316 chromosome 1, complete genomeacetyltransferase1e-0963.2
NC_014206:3468500:347082834708283471460633Geobacillus sp. C56-T3 chromosome, complete genomesugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family2e-0858.9
NC_016593:3402205:341881234188123419444633Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completesugar O-acyltransferase, sialic acid O-acetyltransferase NeuD7e-0857.4
NC_014974:246404:259975259975260607633Thermus scotoductus SA-01 chromosome, complete genomeacetyltransferase with multiple hexapeptide repeat domains1e-0756.6
NC_014622:2477019:248231924823192482960642Paenibacillus polymyxa SC2 chromosome, complete genomeacetyltransferase8e-0753.9
NC_014011:1760793:176745317674531768064612Aminobacterium colombiense DSM 12261 chromosome, complete genomesugar O-acyltransferase, sialic acid O- acetyltransferase NeuD family4e-0651.2