Pre_GI: BLASTP Hits

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Query: NC_008262:2242432:2257146 Clostridium perfringens SM101, complete genome

Start: 2257146, End: 2258216, Length: 1071

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:2356148:2370650237065023717201071Clostridium perfringens str. 13, complete genomeprobable ATP /GTP binding protein0645
NC_013517:1038000:1052379105237910534071029Sebaldella termitidis ATCC 33386, complete genometRNA 2-selenouridine synthase7e-60231
NC_002937:614000:6330966330966341361041Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completerhodanese-like domain protein2e-41169
NC_008751:2774000:2780450278045027814901041Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeRhodanese domain protein3e-41169
NC_014118:2316000:2334907233490723359741068Burkholderia sp. CCGE1002 chromosome chromosome 2, completetRNA 2-selenouridine synthase3e-40166
NC_007335:117572:1385271385271395791053Prochlorococcus marinus str. NATL2A, complete genomerhodanese-like1e-38160
NC_014153:2282725:2288370228837022894971128Thiomonas intermedia K12 chromosome, complete genometRNA 2-selenouridine synthase2e-38160
NC_002950:1981155:1984705198470519857391035Porphyromonas gingivalis W83, complete genomerhodanese-like domain protein3e-38159
NC_008819:679320:7013037013037023551053Prochlorococcus marinus str. NATL1A, complete genomePredicted ATPase3e-38159
NC_015571:168617:1686171686171696511035Porphyromonas gingivalis TDC60, complete genometRNA 2-selenouridine synthase3e-38159
NC_010729:2038118:2038118203811820391521035Porphyromonas gingivalis ATCC 33277, complete genomehypothetical protein5e-37155
NC_008787:437786:4563324563324573361005Campylobacter jejuni subsp. jejuni 81-176, complete genometRNA 2-selenouridine synthase2e-31136
NC_014802:441000:458995458995459993999Campylobacter jejuni subsp. jejuni ICDCCJ07001 chromosome, completeGTP-binding protein4e-31135
NC_017280:435347:4538924538924548961005Campylobacter jejuni subsp. jejuni M1 chromosome, complete genomeGTP-binding protein8e-31134
NC_015693:53196:7119971199722421044Runella slithyformis DSM 19594 plasmid pRUNSL01, complete sequencetRNA 2-selenouridine synthase4e-30132
NC_015410:2505168:2525939252593925270391101Pseudomonas mendocina NK-01 chromosome, complete genometRNA 2-selenouridine synthase2e-24113
NC_015663:2807574:2807574280757428086501077Enterobacter aerogenes KCTC 2190 chromosome, complete genometRNA 2-selenouridine synthase5e-1995.5
NC_020260:2725201:2753961275396127551391179Cronobacter sakazakii Sp291, complete genometRNA 2-selenouridine synthase2e-1893.6