Pre_GI: BLASTP Hits

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Query: NC_008262:101731:115034 Clostridium perfringens SM101, complete genome

Start: 115034, End: 116479, Length: 1446

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008261:64678:7974479744811891446Clostridium perfringens ATCC 13124, complete genomePTS system, N-acetylglucosamine-specific IIBC component0787
NC_003366:64908:1034471034471046641218Clostridium perfringens str. 13, complete genomeprobable PTS system enzyme0639
NC_015687:1478668:1499413149941315008791467Clostridium acetobutylicum DSM 1731 chromosome, complete genomephosphotransferase system IIC component3e-124445
NC_009848:775000:7985517985517999211371Bacillus pumilus SAFR-032, complete genomePTS family glucose/glucoside (glc) porter component IIBC7e-105381
NC_019970:2263427:2271250227125022726381389Thermoanaerobacterium thermosaccharolyticum M0795, complete genomePTS system N-acetylglucosamine-specific IICB component, Glc family2e-101369
NC_015555:1989463:1999322199932220007101389Thermoanaerobacterium xylanolyticum LX-11 chromosome, completePTS system, N-acetylglucosamine-specific IIBC subunit3e-99362
NC_012914:2360989:2382714238271423841651452Paenibacillus sp. JDR-2, complete genomePTS system, N-acetylglucosamine-specific IIBC subunit5e-92338
NC_011916:467106:4696614696614714151755Caulobacter crescentus NA1000 chromosome, complete genomePTS system N-acetylglucosamine-specific transporter subunit IIBC3e-84312
NC_014958:629459:6294596294596315162058Deinococcus maricopensis DSM 21211 chromosome, complete genomePTS system, glucose-specific IIBC subunit1e-83310
NC_013517:3082279:3099800309980031012091410Sebaldella termitidis ATCC 33386, complete genomePTS system, glucose-like IIB subunint3e-83309
NC_016935:7426389:7426389742638974278791491Paenibacillus mucilaginosus 3016 chromosome, complete genomePTS system N-acetylglucosamine-specific transporter subunit IIBC1e-81304
NC_015690:7334786:7336309733630973377991491Paenibacillus mucilaginosus KNP414 chromosome, complete genomePTS system, N-acetylglucosamine-specific IIBC component2e-81303
NC_008593:1060548:1068919106891910708861968Clostridium novyi NT, complete genomePTS enzyme II, ABC component2e-79296
NC_021182:2965395:2976633297663329786602028Clostridium pasteurianum BC1, complete genomePTS system, glucose-specific IIBC component2e-78293
NC_009348:3029963:3029963302996330314411479Aeromonas salmonicida subsp. salmonicida A449, complete genomePTS system, N-acetylglucosamine-specific IIBC component5e-78291
NC_016632:951500:9648899648899663281440Serratia symbiotica str. 'Cinara cedri' chromosome, completefused glucose-specific PTS enzymes: IIBcomponent, IIC component1e-77290
NC_014829:3822125:3847357384735738494622106Bacillus cellulosilyticus DSM 2522 chromosome, complete genomePTS system, glucose-specific IIBC subunit2e-77290
NC_006155:2893802:2907773290777329092061434Yersinia pseudotuberculosis IP 32953, complete genomePTS system, glucose-specific IIBC component4e-77289
NC_010634:2810815:2824785282478528262181434Yersinia pseudotuberculosis PB1/+, complete genomePTS system, glucose-specific IIBC subunit4e-77288
NC_020210:901240:9012409012409032642025Geobacillus sp. GHH01, complete genometrigger enzyme3e-76286
NC_016593:1092812:1092812109281210948302019Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeglucose-specific phosphotransferase enzyme IIA component1e-75284
NC_008262:2348328:2353502235350223550311530Clostridium perfringens SM101, complete genomePTS system, glucose-specific IIBC component2e-75283
NC_017353:152151:1718831718831739222040Staphylococcus lugdunensis N920143, complete genomePTS system glucose-specific transporter subunit IIABC5e-74278
NC_015601:1463500:1463840146384014652761437Erysipelothrix rhusiopathiae str. Fujisawa, complete genomePTS system, N-acetylglucosamine-specific IIBC components2e-73276
NC_010516:2900057:2923624292362429255791956Clostridium botulinum B1 str. Okra, complete genomePTS system, glucose family, IIABC component6e-71268
NC_012781:2802000:2806006280600628075231518Eubacterium rectale ATCC 33656, complete genomePTS system, N-acetylglucosamine-specific IIBC component2e-70267
NC_012563:3090954:3118567311856731205221956Clostridium botulinum A2 str. Kyoto, complete genomePTS system, glucose family, IIABC component1e-70267
NC_013517:599949:6184516184516201901740Sebaldella termitidis ATCC 33386, complete genomePTS system, glucose-specific IIBC subunit2e-70266
NC_009697:2790277:2817890281789028198451956Clostridium botulinum A str. ATCC 19397 chromosome, completePTS system glucose family transporter subunit IIABC2e-70266
NC_009495:2876865:2904478290447829064331956Clostridium botulinum A str. ATCC 3502 chromosome, complete genomePTS system glucose family transporter subunit IIABC2e-70266
NC_014624:2996377:3012896301289630151242229Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein5e-69262
NC_010572:5445081:5445081544508154463401260Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative phosphotransferase system IIC component3e-69262
NC_003888:3138905:3159229315922931604791251Streptomyces coelicolor A3(2), complete genomePTS transmembrane component1e-67257
NC_003197:2894344:2895879289587928974201542Salmonella typhimurium LT2, complete genomeputative phosphotransferase system IIC component3e-66253
NC_016810:2871689:2918445291844529199861542Salmonella enterica subsp. enterica serovar Typhimurium strPTS system, glucose-specific IIbc component3e-66253
NC_016857:2871689:2918445291844529199861542Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative phosphotransferase system IIC component3e-66253
NC_016860:2917910:2919445291944529209861542Salmonella enterica subsp. enterica serovar Typhimurium strputative PTS system IIC protein3e-66253
NC_020064:1150982:1153534115353411550331500Serratia marcescens FGI94, complete genomePTS system D-glucose-specific IIB component, Glc family2e-66253
NC_010520:2937981:2963980296398029659351956Clostridium botulinum A3 str. Loch Maree, complete genomePTS system, glucose family, IIABC component2e-66253
NC_010723:3395187:3426300342630034279521653Clostridium botulinum E3 str. Alaska E43, complete genomePTS system, glucose-like IIB component2e-66253
NC_011083:2847318:2870385287038528719261542Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,pts system, glucose-specific iibc component7e-66251
NC_015391:1013608:1023695102369510255901896Carnobacterium sp. 17-4 chromosome, complete genomePTS system glucose-specific EIICBA component8e-66251
NC_017046:2896651:2917186291718629187031518Salmonella enterica subsp. enterica serovar Typhimurium str. 798PTS system glucose-specific transporter subunit IIBC8e-66251
NC_011751:3048490:3069839306983930713651527Escherichia coli UMN026 chromosome, complete genomePTS system glucose-specific EIIABC component from bacteriophage origin1e-65251
NC_013282:1200993:1200993120099312024981506Cronobacter turicensis, complete genomePTS system glucose-specific EIICBA component1e-65251
NC_020260:2725201:2743622274362227451211500Cronobacter sakazakii Sp291, complete genomehypothetical protein3e-65249
NC_016114:4614924:4614924461492446161831260Streptomyces flavogriseus ATCC 33331 chromosome, complete genomePTS system transporter subunit IIC2e-64246
NC_015953:2640500:2659868265986826611271260Streptomyces sp. SirexAA-E chromosome, complete genomephosphotransferase system EIIC2e-63243
NC_016602:3122700:3149726314972631512971572Vibrio furnissii NCTC 11218 chromosome 1, complete sequencefused maltose and glucose-specific PTS enzymes: IIB component/IIC component1e-62241
NC_003888:3138905:3157707315770731590021296Streptomyces coelicolor A3(2), complete genomePTS transmembrane component3e-62239
NC_009648:3224495:3249571324957132510461476Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative phosphotransferase system IIC component5e-62238
NC_012691:2146473:2159279215927921608711593Tolumonas auensis DSM 9187, complete genomePTS system, glucose-like IIB subunint4e-59229
NC_015953:2640500:2661391266139126626921302Streptomyces sp. SirexAA-E chromosome, complete genomephosphotransferase system EIIC6e-59228
NC_017243:2813733:2813733281373328158502118Brachyspira intermedia PWS/A chromosome, complete genomePTS system N-acetyl glucosamine specific transporter subunit IIABC4e-58225
NC_015873:380485:3817513817513839222172Megasphaera elsdenii DSM 20460, complete genomePTS system glucose-specific EIICBA component2e-57223
NC_009832:2460027:2463056246305624644801425Serratia proteamaculans 568, complete genomePTS system, maltose and glucose-specific IIBC subunit3e-56219
NC_006156:685344:6853446853446868881545Borrelia garinii PBi chromosome linear, complete sequencePTS system, glucose-specific IIBC component5e-56219
NC_009778:1902995:1916601191660119181901590Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-55216
NC_016023:1959255:1959255195925519608621608Bacillus coagulans 36D1 chromosome, complete genomePTS system glucose-like transporter transporter subunit IIB5e-50199
NC_013517:1823926:1838647183864718402271581Sebaldella termitidis ATCC 33386, complete genomePTS system, glucose-like IIB subunint4e-49196
NC_010516:359310:3652583652583668411584Clostridium botulinum B1 str. Okra, complete genomePTS system, glucose/maltose-specfic, IIBC component2e-46187
NC_011742:3057444:3067378306737830689581581Escherichia coli S88 chromosome, complete genomePhosphotransferase system system, maltose and glucose-specific IIABC component4e-45182
NC_007946:3125577:3135511313551131370911581Escherichia coli UTI89, complete genomePTS system, maltose and glucose-specific IIABC component4e-45182
NC_011745:3197584:3207835320783532094151581Escherichia coli ED1a chromosome, complete genomePTS system maltose and glucose-specific transporter subunit IIABC5e-45182
NC_013361:3823347:3833597383359738351771581Escherichia coli O26:H11 str. 11368 chromosome, complete genomephosphotransferase system enzyme:IIB component, IIC component1e-44181
NC_008253:2965573:2975697297569729772261530Escherichia coli 536, complete genomePTS system, maltose and glucose-specific IIABC component2e-44181
NC_010498:3023442:3033694303369430352741581Escherichia coli SMS-3-5, complete genomePTS system, maltose and glucose-specific IIBC component family protein3e-44179
NC_007613:2699500:2707796270779627093761581Shigella boydii Sb227, complete genome5e-43176
NC_013171:497499:5162235162235178121590Anaerococcus prevotii DSM 20548, complete genomePTS system, alpha-glucoside-specific IIBC subunit1e-40167
NC_020291:6310000:6330514633051463320731560Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomePTS system maltose- and glucose-specific EIICB component MalX2e-40167
NC_006582:2205154:2207363220736322089131551Bacillus clausii KSM-K16, complete genomePTS system, maltose/glucose-specific enzyme II, ABC component2e-40167
NC_017188:753039:7807007807007822381539Bacillus amyloliquefaciens TA208 chromosome, complete genomePTS system, maltose-specific enzyme IIBC component3e-40166
NC_008710:108057:1129081129081146171710Borrelia turicatae 91E135, complete genomePTS system, glucose-specific IIABC component4e-40166
NC_010674:311378:3273303273303289881659Clostridium botulinum B str. Eklund 17B, complete genomepts system, iibc component2e-38160
NC_014921:22828:3575535755383552601Mycoplasma fermentans M64 chromosome, complete genomePTS system, glucose-specific iiabc component1e-38160
NC_009009:1792317:1792317179231717945092193Streptococcus sanguinis SK36, complete genomePTS system glucose-specific EIIC BA component (EIICBA-Glc) (EII- Glc/EIII-Glc), putative8e-38158
NC_017347:2437902:2440876244087624424801605Staphylococcus aureus subsp. aureus T0131 chromosome, completePTS family arbutin-salicin-cellobiose (ASC) porter component IIBC2e-37157
NC_010673:113133:1131331131331148451713Borrelia hermsii DAH, complete genomePTS system, glucose-specific IIABC component1e-36154
NC_015975:1936504:1940629194062919428212193Lactobacillus ruminis ATCC 27782 chromosome, complete genomePTS system, glucose-specific IIABC component1e-35151
NC_009848:720510:7393877393877409671581Bacillus pumilus SAFR-032, complete genomePTS family porter component IIBC1e-34147
NC_015567:2420169:2424730242473024263881659Serratia sp. AS9 chromosome, complete genomePTS system, alpha-glucoside-specific IIBC subunit8e-33142
NC_015566:2420287:2424848242484824265061659Serratia sp. AS12 chromosome, complete genomePTS system, alpha-glucoside-specific IIBC subunit8e-33142
NC_007296:1669995:1682231168223116844172187Streptococcus pyogenes MGAS6180, complete genomePTS system, glucose-specific IIABC component3e-32140
NC_011375:1607656:1619784161978416219702187Streptococcus pyogenes NZ131 chromosome, complete genomePTS system glucose-specific IIBC component2e-32140
NC_008021:1634912:1645297164529716474832187Streptococcus pyogenes MGAS9429, complete genomePTS system, glucose-specific IIABC component2e-32140
NC_009332:1638763:1645959164595916481452187Streptococcus pyogenes str. Manfredo chromosome, complete genomePTS system, glucose-specific IIABC component2e-32140
NC_008022:1698431:1708676170867617108622187Streptococcus pyogenes MGAS10270, complete genomePTS system, glucose-specific IIABC component2e-32140
NC_016816:2073677:2089935208993520915571623Pantoea ananatis LMG 5342, complete genomePTS system alpha-glucoside-specific EIICB component2e-32140
NC_017040:1524198:1536377153637715385632187Streptococcus pyogenes MGAS15252 chromosome, complete genomePTS system maltose and glucose-specific fused IIABC component3e-32139
NC_008024:1725442:1737490173749017396762187Streptococcus pyogenes MGAS10750, complete genomePTS system, glucose-specific IIABC component2e-31137
NC_002737:1644602:1654795165479516569812187Streptococcus pyogenes M1 GAS, complete genomeputative PTS system, enzyme II, A component2e-31137
NC_007297:1639954:1651890165189016537851896Streptococcus pyogenes MGAS5005, complete genomePTS system, glucose-specific IIABC component3e-31136
NC_003485:1707653:1712675171267517148612187Streptococcus pyogenes MGAS8232, complete genomeputative PTS system, enzyme II, A component1e-30134
NC_015389:1375315:1375315137531513769011587Coriobacterium glomerans PW2 chromosome, complete genome2e-29130
NC_014121:2330451:2334551233455123357171167Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completebifunctional maltose and glucose-specific PTS system components IICB2e-29130
NC_003366:64908:104712104712104897186Clostridium perfringens str. 13, complete genomehypothetical protein4e-26119
NC_007633:952728:9750369750369767781743Mycoplasma capricolum subsp. capricolum ATCC 27343, completePTS system glucose-specific IIBC component2e-21104
NC_014751:225477:2333842333842352251842Mycoplasma leachii PG50 chromosome, complete genomePTS system, IIBC component2e-1997.4
NC_014121:2330451:235055323505532351023471Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completePTS system, maltose and glucose-specific IIBC component9e-1892
NC_016114:4614924:461640646164064616639234Streptomyces flavogriseus ATCC 33331 chromosome, complete genomePTS system transporter subunit IIB/cysteine phosphorylation domain-containing protein2e-1480.9
NC_015953:2640500:265941526594152659648234Streptomyces sp. SirexAA-E chromosome, complete genomephosphotransferase system EIIB/cysteine, phosphorylation site6e-1479.3
NC_010572:5445081:544656054465605446793234Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative phosphotransferase system IIB component2e-1377.4
NC_016582:8031000:803108280310828031315234Streptomyces bingchenggensis BCW-1 chromosome, complete genomephosphotransferase system IIB component2e-1273.9
NC_003888:3138905:315731531573153157548234Streptomyces coelicolor A3(2), complete genomehypothetical protein4e-1273.2
NC_004337:3590323:389030638903063890791486Shigella flexneri 2a str. 301, complete genomePTS system, arbutin-like IIB component1e-1172
NC_017338:470993:4808844808844823111428Staphylococcus aureus subsp. aureus JKD6159 chromosome, completePTS system trehalose-specific IIBC component3e-0653.5