Pre_GI: BLASTN Hits

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Query: NC_008261:2920999 Clostridium perfringens ATCC 13124, complete genome

Start: 2920999, End: 2940081, Length: 19083

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_020291:23185323185325026518413Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome2e-84321BLASTN svgBLASTP svg
NC_010516:37243123724312374347419163Clostridium botulinum B1 str. Okra, complete genome7e-65256BLASTN svgBLASTP svg
NC_012563:39218593921859394111319255Clostridium botulinum A2 str. Kyoto, complete genome2e-62248BLASTN svgBLASTP svg
NC_010520:37538753753875377298819114Clostridium botulinum A3 str. Loch Maree, complete genome2e-56228BLASTN svgBLASTP svg
NC_010723:29895429895431770918756Clostridium botulinum E3 str. Alaska E43, complete genome3e-27131BLASTN svgBLASTP svg
NC_004557:2711702*2711702274444632745Clostridium tetani E88, complete genome1e-26129BLASTN svgBLASTP svg
NC_020291:11498871149887117209922213Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome4e-20107BLASTN svgBLASTP svg
NC_020291:57520995752099577709925001Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome1e-1799.6BLASTN svgBLASTP svg
NC_004461:813748*81374883658622839Staphylococcus epidermidis ATCC 12228, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_002976:707827*70782773065222826Staphylococcus epidermidis RP62A, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_010723:31333023133302315353220231Clostridium botulinum E3 str. Alaska E43, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_014328:4387303*4387303445852771225Clostridium ljungdahlii ATCC 49587 chromosome, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_016012:879972*87997290262722656Candidatus Arthromitus sp. SFB-rat-Yit, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013791:22733892273389229479821410Bacillus pseudofirmus OF4 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_013171:18080001808000183128023281Anaerococcus prevotii DSM 20548, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010003:1577934*1577934159579517862Petrotoga mobilis SJ95, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_005957:43116794311679433450022822Bacillus thuringiensis serovar konkukian str. 97-27, complete4e-0867.9BLASTN svgBLASTP svg
NC_012563:3556763*3556763357533918577Clostridium botulinum A2 str. Kyoto, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_013316:3863728*3863728388614422417Clostridium difficile R20291, complete genome9e-0660BLASTN svgBLASTP svg
NC_009089:3998347*3998347402074022394Clostridium difficile 630, complete genome9e-0660BLASTN svgBLASTP svg