Pre_GI: BLASTP Hits

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Query: NC_008261:676000:680740 Clostridium perfringens ATCC 13124, complete genome

Start: 680740, End: 681663, Length: 924

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:728859:733374733374734297924Clostridium perfringens str. 13, complete genomeglutaminase5e-178623
NC_008262:654000:658610658610659533924Clostridium perfringens SM101, complete genomeglutaminase5e-176616
NC_008261:2481500:249993924999392500856918Clostridium perfringens ATCC 13124, complete genomeglutaminase1e-99363
NC_003366:2286083:228608322860832287000918Clostridium perfringens str. 13, complete genomeglutaminase1e-99363
NC_008262:2169262:216926221692622170179918Clostridium perfringens SM101, complete genomeglutaminase1e-99363
NC_014915:2149884:215727521572752158204930Geobacillus sp. Y412MC52 chromosome, complete genomeGlutaminase, core2e-71269
NC_013411:3010000:301734430173443018270927Geobacillus sp. Y412MC61, complete genomeGlutaminase3e-71268
NC_015519:2580310:260002926000292600931903Tepidanaerobacter sp. Re1 chromosome, complete genomeglutaminase3e-67255
NC_010718:304440:317499317499318425927Natranaerobius thermophilus JW/NM-WN-LF, complete genomeL-glutaminase9e-67253
NC_016048:3667890:366945436694543670401948Oscillibacter valericigenes Sjm18-20, complete genomeglutaminase4e-65248
NC_009925:330470:334454334454335419966Acaryochloris marina MBIC11017, complete genomeglutaminase1e-58226
NC_005085:4499500:450058045005804501494915Chromobacterium violaceum ATCC 12472, complete genomeglutaminase2e-57222
NC_005810:3964468:397018639701863971112927Yersinia pestis biovar Microtus str. 91001, complete genomeglutaminase1e-55217
NC_004088:3661601:367623336762333677159927Yersinia pestis KIM, complete genomeglutaminase1e-55217
NC_008149:3529428:354405935440593544985927Yersinia pestis Nepal516, complete genomeglutaminase1e-55217
NC_008150:361224:369061369061369987927Yersinia pestis Antiqua, complete genomeputative glutaminase1e-55217
NC_010159:138879:154831154831155757927Yersinia pestis Angola, complete genomeglutaminase1e-55217
NC_003143:1033500:104815510481551049081927Yersinia pestis CO92, complete genomeglutaminase1e-55217
NC_009381:627685:633402633402634328927Yersinia pestis Pestoides F chromosome, complete genomeglutaminase1e-55217
NC_014029:1001000:100677510067751007701927Yersinia pestis Z176003 chromosome, complete genomeglutaminase1e-55217
NC_017154:941065:948920948920949846927Yersinia pestis D106004 chromosome, complete genomeglutaminase1e-55217
NC_009708:986918:992835992835993761927Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeglutaminase7e-56217
NC_010465:933488:939299939299940225927Yersinia pseudotuberculosis YPIII, complete genomeGlutaminase1e-55217
NC_006155:3779381:379397837939783794904927Yersinia pseudotuberculosis IP 32953, complete genomeglutaminase1e-55217
NC_010634:3692321:370696037069603707886927Yersinia pseudotuberculosis PB1/+, complete genomeglutaminase, core1e-55217
NC_017265:854492:860210860210861136927Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative glutaminase1e-55217
NC_017168:50391:561935619357119927Yersinia pestis A1122 chromosome, complete genomeglutaminase1e-55217
NC_017160:945176:950951950951951820870Yersinia pestis D182038 chromosome, complete genomeglutaminase3e-55215
NC_017047:3907854:390785439078543908780927Rahnella aquatilis HX2 chromosome, complete genomeglutaminase8e-54210
NC_015061:3840463:384046338404633841389927Rahnella sp. Y9602 chromosome, complete genomeGlutaminase, core8e-54210
NC_009778:1717458:175628917562891757215927Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein8e-54210
NC_016818:3851542:385230138523013853227927Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeglutaminase A1e-53209
NC_009654:4253431:427287042728704273781912Marinomonas sp. MWYL1, complete genomeglutaminase8e-53207
NC_008800:4013298:402965540296554030596942Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,glutaminase7e-52204
NC_016902:2361628:237991523799152380841927Escherichia coli KO11FL chromosome, complete genomeglutaminase1e-51203
NC_008563:1651270:165127016512701652196927Escherichia coli APEC O1, complete genomeputative glutaminase1e-51203
NC_010498:1615980:163588216358821636808927Escherichia coli SMS-3-5, complete genomeglutaminase1e-51203
CP002516:2361628:237991523799152380841927Escherichia coli KO11, complete genomeGlutaminase, core1e-51203
NC_007974:138176:152666152666153664999Ralstonia metallidurans CH34 chromosome 2, complete sequenceglutaminase1e-51203
NC_010572:802269:8072158072158084981284Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative glutaminase2e-51203
NC_009792:1479779:149572614957261496640915Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-51202
NC_010067:1414000:142156814215681422548981Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-51201
NC_012214:2019000:203569820356982036624927Erwinia pyrifoliae Ep1/96, complete genomeGlutaminase4e-51201
NC_013162:1130554:114581411458141146728915Capnocytophaga ochracea DSM 7271, complete genomeGlutaminase1e-50199
NC_015224:3892972:390692339069233907867945Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,glutaminase2e-49196
NC_017190:1465079:151419815141981514866669Bacillus amyloliquefaciens LL3 chromosome, complete genomeglutaminase3e-49195
NC_010515:2449143:246439124643912465305915Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceGlutaminase8e-49194
NC_013222:1898164:191124119112411912107867Robiginitalea biformata HTCC2501, complete genomeglutaminase4e-48192
NC_008601:168063:1867271867271882681542Francisella tularensis subsp. novicida U112, complete genomeglutaminase3e-48192
NC_009749:1825453:1825453182545318269821530Francisella tularensis subsp. holarctica FTA, complete genomeglutaminase liver isoform2e-48192
NC_007880:1830803:1830803183080318323441542Francisella tularensis subsp. holarctica, complete genomeL-glutaminase2e-48192
NC_008369:1830442:1830442183044218319831542Francisella tularensis subsp. holarctica OSU18, complete genomeglutaminase2e-48192
NC_013508:275081:297236297236298162927Edwardsiella tarda EIB202, complete genomeglutaminase6e-48191
NC_018524:5066720:5089511508951150907851275Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeglutaminase A3e-47189
NC_020418:1397112:142213814221381423088951Morganella morganii subsp. morganii KT, complete genomeGlutaminase3e-47189
NC_012779:261438:280262280262281188927Edwardsiella ictaluri 93-146, complete genomeglutaminase, putative4e-47188
NC_015673:1038673:1045329104532910466001272Corynebacterium resistens DSM 45100 chromosome, complete genomeglutaminase5e-47188
NC_014910:1912552:193575119357511936677927Alicycliphilus denitrificans BC chromosome, complete genomeglutaminase, core1e-45183
NC_014033:772754:772754772754773668915Prevotella ruminicola 23 chromosome, complete genomeglutaminase1e-44180
NC_019907:539749:569284569284570210927Liberibacter crescens BT-1 chromosome, complete genomeGlutaminase1e-43177
NC_021177:2309615:2310188231018823112521065Streptomyces fulvissimus DSM 40593, complete genomeGlutaminase 28e-43174
NC_013861:3659094:367522336752233676152930Legionella longbeachae NSW150, complete genomeglutaminase7e-41167
NC_009614:4802000:480204248020424803004963Bacteroides vulgatus ATCC 8482 chromosome, complete genomeglutaminase3e-37155
NC_009480:31412:336773367734654978Clavibacter michiganensis subsp. michiganensis NCPPB 382, completeputative glutaminase6e-37154
NC_019771:4922140:492619149261914927096906Anabaena cylindrica PCC 7122, complete genomeL-glutaminase1e-34147
NC_017190:1465079:147030414703041470603300Bacillus amyloliquefaciens LL3 chromosome, complete genomeglutaminase3e-1582.8