Pre_GI: BLASTP Hits

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Query: NC_008261:64678:90409 Clostridium perfringens ATCC 13124, complete genome

Start: 90409, End: 90645, Length: 237

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021182:4602683:461028346102834610549267Clostridium pasteurianum BC1, complete genomehypothetical protein8e-1475.9
NC_015687:3326461:333382833338283334067240Clostridium acetobutylicum DSM 1731 chromosome, complete genomehypothetical protein9e-1062.4
NC_003030:3324834:333220133322013332440240Clostridium acetobutylicum ATCC 824, complete genomehypothetical protein9e-1062.4
NC_014328:4471995:447827244782724478511240Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein2e-0961.2
NC_012658:3827500:383387938338793834109231Clostridium botulinum Ba4 str. 657 chromosome, complete genomehypothetical protein4e-0857
NC_012563:4004709:401108240110824011312231Clostridium botulinum A2 str. Kyoto, complete genomehypothetical protein4e-0856.6
NC_010516:3807780:381415438141543814384231Clostridium botulinum B1 str. Okra, complete genomehypothetical protein4e-0856.6
NC_010520:3837378:384375238437523843982231Clostridium botulinum A3 str. Loch Maree, complete genomehypothetical protein4e-0856.6
NC_009495:3735703:374315637431563743386231Clostridium botulinum A str. ATCC 3502 chromosome, complete genomehypothetical protein4e-0856.6
NC_009697:3711692:371914537191453719375231Clostridium botulinum A str. ATCC 19397 chromosome, completehypothetical protein4e-0856.6
NC_009698:3609881:361625436162543616484231Clostridium botulinum A str. Hall chromosome, complete genomehypothetical protein4e-0856.6
NC_009699:3839575:384594938459493846179231Clostridium botulinum F str. Langeland chromosome, complete genomehypothetical protein4e-0856.6
NC_017297:3838189:384456338445633844793231Clostridium botulinum F str. 230613 chromosome, complete genomehypothetical protein4e-0856.6
NC_011837:165913:180174180174180413240Clostridium kluyveri NBRC 12016, complete genomehypothetical protein9e-0855.8
NC_009706:165913:180174180174180413240Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein9e-0855.8