Pre_GI: BLASTP Hits

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Query: NC_008261:64678:65733 Clostridium perfringens ATCC 13124, complete genome

Start: 65733, End: 66989, Length: 1257

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:64908:6596065960672161257Clostridium perfringens str. 13, complete genomehypothetical protein0756
NC_008262:67711:6875068750700061257Clostridium perfringens SM101, complete genomehypothetical protein0755
NC_018866:2033960:2053484205348420547221239Dehalobacter sp. DCA chromosome, complete genomeHTH domain of SpoOJ/ParA/ParB/repB family, involved in chromosome partitioning4e-123441
NC_018867:2063741:2083265208326520845031239Dehalobacter sp. CF chromosome, complete genomeHTH domain of SpoOJ/ParA/ParB/RepB family protein4e-123441
NC_007907:5297477:5311628531162853128631236Desulfitobacterium hafniense Y51, complete genomehypothetical protein4e-122438
NC_014328:85290:9006390063913131251Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein9e-120430
NC_020291:6274030:6278542627854262797981257Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomehypothetical protein3e-116418
NC_010674:3619722:3634448363444836357041257Clostridium botulinum B str. Eklund 17B, complete genomehypothetical protein3e-115415
NC_013768:29324:3320333203344441242Listeria monocytogenes 08-5923, complete genomehypothetical protein4e-104378
NC_013766:29324:3320333203344441242Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein4e-104378
NC_015501:1669521:1689039168903916902831245Porphyromonas asaccharolytica DSM 20707 chromosome, completeUncharacterized conserved protein UCP0335634e-97355
NC_000853:1480478:1506334150633415075541221Thermotoga maritima MSB8, complete genomehypothetical protein4e-75282
NC_013642:1317114:1317114131711413183341221Thermotoga naphthophila RKU-10, complete genomehypothetical protein8e-75281
NC_009486:1293510:1293510129351012947301221Thermotoga petrophila RKU-1 chromosome, complete genomehypothetical protein8e-75281
NC_010483:1385000:1413443141344314146631221Thermotoga sp. RQ2, complete genomehypothetical protein4e-73275
NC_011832:2760000:2776684277668427779401257Candidatus Methanosphaerula palustris E1-9c, complete genomehypothetical protein2e-65250
NC_014652:666227:6821656821656834391275Caldicellulosiruptor hydrothermalis 108 chromosome, completehypothetical protein6e-28125
NC_014654:2180994:2183488218348821847711284Halanaerobium sp. 'sapolanicus' chromosome, complete genomeUncharacterized conserved protein UCP0335636e-27122
NC_011296:229494:2509262509262521611236Thermodesulfovibrio yellowstonii DSM 11347, complete genomehypothetical protein2e-25116
NC_015949:2002752:2005999200599920072731275Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomehypothetical protein2e-23110
NC_007503:919808:9404489404489417101263Carboxydothermus hydrogenoformans Z-2901, complete genomehypothetical protein2e-22107
NC_018750:1591895:1594609159460915959011293Streptomyces venezuelae ATCC 10712, complete genomeSpoOJ or ParA or ParB or repB family protein1e-22107
NC_013939:106681:1240501240501252971248Deferribacter desulfuricans SSM1, complete genomehypothetical protein5e-22105
NC_014314:576465:6146556146556170512397Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completehypothetical protein2e-20100
NC_014758:310394:3168893168893181331245Calditerrivibrio nitroreducens DSM 19672 chromosome, completehypothetical protein2e-20100
NC_015672:2071141:2071141207114120723881248Flexistipes sinusarabici DSM 4947 chromosome, complete genomehypothetical protein2e-20100
NC_013510:2521186:2539790253979025411541365Thermomonospora curvata DSM 43183, complete genomehypothetical protein2e-1790.9